Evidence map›Paper›PMID 15677315›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.

Alan Lloyd, Christopher L Plaisier, Dana Carroll, Gary N Drews

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed, 415 citations in OpenAlex.

  1. Review
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  9. Recent Advances in Tomato Gene Editing.International journal of molecular sciences · 2024
    Review
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  11. Review
  12. Review
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  14. The genusFrontiers in plant science · 2023
    Review
  15. Review
  16. CRISPR-Based Genome Editing and Its Applications in Woody Plants.International journal of molecular sciences · 2022
    Review
  17. Article
  18. Review
  19. Expanding Gene-Editing Potential in Crop Improvement with Pangenomes.International journal of molecular sciences · 2022
    Review
  20. Review

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alan LloydDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112-0840, USA.
Christopher L Plaisier
Dana Carroll
Gary N Drews
University of Utah · US

Funding

Stimulating Gene Targeting with Zinc Finger NucleasesR01GM065173 · NIGMS · UNIVERSITY OF UTAH · PI CARROLL, DANA · 2002 to 2004
$589k
NIGMS NIH HHS GM65173NIGMS NIH HHS R01 GM065173
6 · The paper itself

Abstract

Targeted mutagenesis is an essential tool of reverse genetics that could be used experimentally to investigate basic plant biology or modify crop plants for improvement of important agricultural traits. Although targeted mutagenesis is routine in several model organisms including yeast and mouse, efficient and widely usable methods to generate targeted modifications in plant genes are not currently available. In this study we investigated the efficacy of a targeted-mutagenesis approach based on zinc-finger nucleases (ZFNs). In this procedure, ZFNs are used to generate double-strand breaks at specific genomic sites, and subsequent repair produces mutations at the break site. To determine whether ZFNs can cleave and induce mutations at specific sites within higher plant genomes, we introduced a construct carrying both a ZFN gene, driven by a heat-shock promoter, and its target into the Arabidopsis genome. Induction of ZFN expression by heat shock during seedling development resulted in mutations at the ZFN recognition sequence at frequencies as high as 0.2 mutations per target. Of 106 ZFN-induced mutations characterized, 83 (78%) were simple deletions of 1-52 bp (median of 4 bp), 14 (13%) were simple insertions of 1-4 bp, and 9 (8%) were deletions accompanied by insertions. In 10% of induced individuals, mutants were present in the subsequent generation, thus demonstrating efficient transmission of the ZFN-induced mutations. These data indicate that ZFNs can form the basis of a highly efficient method for targeted mutagenesis of plant genes.

Indexed as

MutagenesisZinc FingersAnimalsArabidopsisBase SequenceDeoxyribonucleasesDNA DamageDNA Mutational AnalysisDNA RepairGene TargetingHot TemperatureSeedlingsDeoxyribonucleases

Identifiers

PMID15677315
PMCPMC548540
OpenAlexW1972933969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.