Evidence map›Paper›PMID 15657872›Full record

ArticleAmerican journal of human genetics2005

Association testing in a linked region using large pedigrees.

Rita M Cantor, Gary K Chen, Päivi Pajukanta, Kenneth Lange

Registry-linked trialAbstract read
In one paragraph

Article in American journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00059098 (Identification of Genes Predisposing to Atherosclerosis), which is not on this map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00059098 completednot on this map

Identification of Genes Predisposing to Atherosclerosis

TypeobservationalSponsorNational Heart, Lung, and Blood Institute (NHLBI)Ran2003 to 2008ConditionsCardiovascular Diseases, Coronary Disease, Heart Diseases
3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. A gene frequency model for QTL mapping using Bayesian inference.Genetics, selection, evolution : GSE · 2010
    Article
  5. A narrow and highly significant linkage signal for severe bipolar disorder in the chromosome 5q33 region in Latin American pedigrees.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2009
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rita M CantorDepartment of Human Genetics, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, CA 90095-7088, USA. rcantor@mednet.ucla.edu
Gary K Chen
Päivi Pajukanta
Kenneth Lange

Funding

STATISTICAL METHODS FOR GENE MAPPINGR01GM053275 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LANGE, KENNETH L · 1995 to 2019
$9.3M
Training Grant in Genomic Analysis and InterpretationT32HG002536 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Valerie A Arboleda, Harold Pimentel · 2002 to 2026
$8.6M
Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
Identification of genes predisposing to atherosclerosisR01HL070150 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PELTONEN, LEENA · 2003 to 2006
$1.5M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
NHGRI NIH HHS T32 HG002536NHGRI NIH HHS T32 HG02536NHLBI NIH HHS HL28418NHLBI NIH HHS HL70150NHLBI NIH HHS R01 HL070150NIGMS NIH HHS GM53275NIGMS NIH HHS R01 GM053275NIMH NIH HHS MH59490NIMH NIH HHS R01 MH059490NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

This report describes computer implementation of a scheme for joint linkage and association analysis. The model implemented in the computer package Mendel estimates both recombination and linkage-disequilibrium parameters and conducts likelihood-ratio tests for (1) linkage alone, (2) linkage and association simultaneously, and (3) association in the presence of linkage. Application of the method to data from Finnish pedigrees with familial combined hyperlipidemia illustrates its potential for identification of associated SNP haplotypes in the presence of linkage. For the test results to be valid, good estimates of haplotype frequencies must be used in the analysis.

Indexed as

Genetic LinkageFemaleFinlandGenome, HumanGenomicsHaplotypesHumansHyperlipidemia, Familial CombinedLod ScoreMaleModels, GeneticPedigreePolymorphism, Single NucleotideSoftware

Identifiers

PMID15657872
PMCPMC1196405

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.