Evidence map›Paper›PMID 1565661›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1992

X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis.

G G Privé, M V Milburn, L Tong, A M de Vos, Z Yamaizumi, S Nishimura, S H Kim

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 129 citations in OpenAlex.

  1. Review
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  7. Article
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  9. Article
  10. Article
  11. The reactivity-driven biochemical mechanism of covalent KRASNature structural & molecular biology · 2018
    Article
  12. Review
  13. Review
  14. Protein Regulation in Signal Transduction.Cold Spring Harbor perspectives in biology · 2016
    Review
  15. Article
  16. Article
  17. Structures of Drosophila melanogaster Rab2 and Rab3 bound to GMPPNP.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

G G PrivéDepartment of Chemistry, University of California, Berkeley 94720.
M V Milburn
L Tong
A M de Vos
Z Yamaizumi
S Nishimura
S H Kim
University of California, Berkeley · US

Funding

XRAY CRYSTALLOGRAPHIC STUDIES OF RAS ONCOGENE PRODUCTSR01CA045593 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KIM, SUNG-HOU · 1987 to 1995
–
NCI NIH HHS CA 45593
6 · The paper itself

Abstract

RAS genes isolated from human tumors often have mutations at positions corresponding to amino acid 12 or 61 of the encoded protein (p21), while retroviral ras-encoded p21 contains substitutions at both positions 12 and 59. These mutant proteins are deficient in their GTP hydrolysis activity, and this loss of activity is linked to their transforming potential. The crystal structures of the mutant proteins are presented here as either GDP-bound or GTP-analogue-bound complexes. Based on these structures, a mechanism for the p21 GTPase reaction is proposed that is consistent with the observed structural and biochemical data. The central feature of this mechanism is a specific stabilization complex formed between the Gln-61 side-chain and the pentavalent gamma-phosphate of the GTP transition state. Amino acids other than glutamine at position 61 cannot stabilize the transition state, and amino acids larger than glycine at position 12 would interfere with the transition-state complex. Thr-59 disrupts the normal position of residue 61, thus preventing its participation in the transition-state complex.

Indexed as

MutationAmino Acid SequenceBinding SitesGuanosine TriphosphateHumansHydrolysisModels, MolecularMolecular Sequence DataProtein ConformationProto-Oncogene Proteins p21(ras)X-Ray DiffractionGuanosine TriphosphateHRAS protein, humanProto-Oncogene Proteins p21(ras)

Identifiers

PMID1565661
PMCPMC48926
OpenAlexW2055747785

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.