Evidence map›Paper›PMID 15654089›Full record

ArticleGenetics2005

The heme activator protein Hap1 represses transcription by a heme-independent mechanism in Saccharomyces cerevisiae.

Thomas Hon, Hee Chul Lee, Zhanzhi Hu, Vishwanath R Iyer, Li Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Clinical Isolate ofOpen journal of medical microbiology · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Measurement of Heme Synthesis Levels in Mammalian Cells.Journal of visualized experiments : JoVE · 2015
    Article
  12. Article
  13. Tetrapyrrole-based drought stress signalling.Plant biotechnology journal · 2015
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Regulation of the HAP1 gene involves positive actions of histone deacetylases.Biochemical and biophysical research communications · 2007
    Article
  20. A fungal family of transcriptional regulators: the zinc cluster proteins.Microbiology and molecular biology reviews : MMBR · 2006
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Thomas HonDepartment of Environmental Health Sciences, Columbia University, Mailman School of Public Health, New York, New York 10032, USA. lz2115@columbia.edu
Hee Chul Lee
Zhanzhi Hu
Vishwanath R Iyer
Li Zhang
Columbia University · USThe University of Texas at Austin · US

Funding

Molecular Chaperones in Heme SignalingR01GM062246 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI ZHANG, LI · 2002 to 2009
$2.5M
NIGMS NIH HHS GM62246NIGMS NIH HHS R01 GM062246
6 · The paper itself

Abstract

The yeast heme activator protein Hap1 binds to DNA and activates transcription of genes encoding functions required for respiration and for controlling oxidative damage, in response to heme. Hap1 contains a DNA-binding domain with a C6 zinc cluster motif, a coiled-coil dimerization element, typical of the members of the yeast Gal4 family, and an acidic activation domain. The regulation of Hap1 transcription-activating activity is controlled by two classes of Hap1 elements, repression modules (RPM1-3) and heme-responsive motifs (HRM1-7). Previous indirect evidence indicates that Hap1 may repress transcription directly. Here we show, by promoter analysis, by chromatin immunoprecipitation, and by electrophoretic mobility shift assay, that Hap1 binds directly to DNA and represses transcription of its own gene by at least 20-fold. We found that Hap1 repression of the HAP1 gene occurs independently of heme concentrations. While DNA binding is required for transcriptional repression by Hap1, deletion of Hap1 activation domain and heme-regulatory elements has varying effects on repression. Further, we found that repression by Hap1 requires the function of Hsp70 (Ssa), but not Hsp90. These results show that Hap1 binds to its own promoter and represses transcription in a heme-independent but Hsp70-dependent manner.

Indexed as

Gene Expression Regulation, FungalTranscription, GeneticChromatinDNA-Binding ProteinsHemeKineticsOxidative StressPromoter Regions, GeneticProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionTrans-ActivatorsTranscription FactorsChromatinDNA-Binding ProteinsHAP1 protein, S cerevisiaeHemeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID15654089
PMCPMC1449556
OpenAlexW2096601233

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.