Evidence map›Paper›PMID 15653811›Full record

ArticlePlant physiology2005

Evolution of the isoprene biosynthetic pathway in kudzu.

Thomas D Sharkey, Sansun Yeh, Amy E Wiberley, Tanya G Falbel, Deming Gong, Donna E Fernandez

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 198 citations in OpenAlex.

  1. Article
  2. Article
  3. Cryptic isoprene emission of soybeans.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Perspectives of cyanobacterial cell factories.Photosynthesis research · 2024
    Review
  6. Article
  7. The Impact and Invasive Mechanisms ofPlants (Basel, Switzerland) · 2023
    Review
  8. Review
  9. MICROBIAL isoprene production: an overview.World journal of microbiology & biotechnology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Thomas D SharkeyDepartment of Botany, University of Wisconsin, Madison, Wisconsin 53706, USA. tsharkey@wisc.edu
Sansun Yeh
Amy E Wiberley
Tanya G Falbel
Deming Gong
Donna E Fernandez
University of Auckland · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isoprene synthase converts dimethylallyl diphosphate, derived from the methylerythritol 4-phosphate (MEP) pathway, to isoprene. Isoprene is made by some plants in substantial amounts, which affects atmospheric chemistry, while other plants make no isoprene. As part of our long-term study of isoprene synthesis, the genetics of the isoprene biosynthetic pathway of the isoprene emitter, kudzu (Pueraria montana), was compared with similar genes in Arabidopsis (Arabidopsis thaliana), which does not make isoprene. The MEP pathway genes in kudzu were similar to the corresponding Arabidopsis genes. Isoprene synthase genes of kudzu and aspen (Populus tremuloides) were cloned to compare their divergence with the divergence seen in MEP pathway genes. Phylogenetic analysis of the terpene synthase gene family indicated that isoprene synthases are either within the monoterpene synthase clade or sister to it. In Arabidopsis, the gene most similar to isoprene synthase is a myrcene/ocimene (acyclic monoterpenes) synthase. Two phenylalanine residues found exclusively in isoprene synthases make the active site smaller than other terpene synthase enzymes, possibly conferring specificity for the five-carbon substrate rather than precursors of the larger isoprenoids. Expression of the kudzu isoprene synthase gene in Arabidopsis caused Arabidopsis to emit isoprene, indicating that whether or not a plant emits isoprene depends on whether or not it has a terpene synthase capable of using dimethylallyl diphosphate.

Indexed as

Alkyl and Aryl TransferasesArabidopsisBinding SitesButadienesChromosome MappingErythritolEvolution, MolecularHemiterpenesMolecular Sequence DataPentanesPhenotypePhylogenyPopulusPuerariaSequence Homology, Amino AcidSugar Phosphates2-C-methylerythritol 4-phosphateAlkyl and Aryl TransferasesButadienesErythritolHemiterpenesisopreneisoprene synthasePentanesSugar Phosphates

Identifiers

PMID15653811
PMCPMC1065370
OpenAlexW1965707214

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.