Evidence map›Paper›PMID 15653638›Full record

ArticleNucleic acids research2005

Serum-deprivation stimulates cap-binding by PARN at the expense of eIF4E, consistent with the observed decrease in mRNA stability.

Ruth Seal, Richard Temperley, Jeffrey Wilusz, Robert N Lightowlers, Zofia M A Chrzanowska-Lightowlers

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ruth SealDepartment of Neurology, The Medical School, University of Newcastle upon Tyne, Framlington Place, Newcastle upon Tyne, NE2 4HH, UK.
Richard Temperley
Jeffrey Wilusz
Robert N Lightowlers
Zofia M A Chrzanowska-Lightowlers
Newcastle University · GB

Funding

Mechanism of Regulation of mRNA StabilityR01GM072481 · NIGMS · COLORADO STATE UNIVERSITY-FORT COLLINS · PI WILUSZ, JEFFREY · 2004 to 2011
$2.7M
NIGMS NIH HHS GM072481NIGMS NIH HHS R01 GM072481Wellcome Trust 074454
6 · The paper itself

Abstract

PARN, a poly(A)-specific ribonuclease, binds the 5' cap-structure of mRNA and initiates deadenylation-dependent decay. Eukaryotic initiation factor 4E (eIF4E) also binds to the cap structure, an interaction that is critical for initiating cap-dependent translation. The stability of various mRNA transcripts in human cell lines is reduced under conditions of serum starvation as determined by both functional and chemical half-lives. Serum starvation also leads to enhanced cap association by PARN. In contrast, the 5' cap occupancy by eIF4E decreases under serum-deprivation, as does the translation of reporter transcripts. Further, we show that PARN is a phosphoprotein and that this modification can be modulated by serum status. Taken together, these data are consistent with a natural competition existing at the 5' cap structure between PARN and eIF4E that may be regulated by changes in post-translational modifications. These phosphorylation-induced changes in the interplay of PARN and eIF4E may determine whether the mRNA is translated or decayed.

Indexed as

RNA StabilityCell LineCulture Media, Serum-FreeEukaryotic Initiation Factor-4EExoribonucleasesHumansPhosphoproteinsPhosphorylationRNA CapsRNA, MessengerCulture Media, Serum-FreeEukaryotic Initiation Factor-4EExoribonucleasesPhosphoproteinsRNA CapsRNA, Messenger

Identifiers

PMID15653638
PMCPMC546156
OpenAlexW2110078785

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.