Evidence map›Paper›PMID 15650433›Full record

ArticleAIDS research and human retroviruses2004

Complete genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2).

Frederic Bibollet-Ruche, Feng Gao, Elizabeth Bailes, Sentob Saragosti, Eric Delaporte, Martine Peeters, George M Shaw, Beatrice H Hahn, Paul M Sharp

Open access · greenAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. CD4 receptor diversity in chimpanzees protects against SIV infection.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  2. Article
  3. Article
  4. Origin of the HIV-1 group O epidemic in western lowland gorillas.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Adaptation of HIV-1 to its human host.Molecular biology and evolution · 2007
    Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Frederic Bibollet-RucheDepartment of Medicine and Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA.
Feng Gao
Elizabeth Bailes
Sentob Saragosti
Eric Delaporte
Martine Peeters
George M Shaw
Beatrice H Hahn
Paul M Sharp
University of Alabama at Birmingham · USDuke University · USHoward Hughes Medical Institute · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI OLAF KUTSCH · 1988 to 2026
$84.1M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
SIV-RCM AND RELATED PRIMATE LENTIVIRUSES IN WEST AFRICAR01AI044596 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI MARX, PRESTON A · 1999 to 2003
$2.4M
GENETIC VARIATION OG HIV AND RELATED LENTIVIRUSESN01AI085338 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HAHN, BEATRICE H · 1998 to 2000
$680k
Molecular Mechanisms of HIV PathogenesisR13AI058790 · NIAID · KEYSTONE SYMPOSIA · PI HAHN, BEATRICE H · 2004 to 2004
$20k
NIAID NIH HHS N01 AI085338NIAID NIH HHS N01 AI85338NIAID NIH HHS P30 AI027767NIAID NIH HHS P30 AI 27767NIAID NIH HHS R01 AI044596NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI44596NIAID NIH HHS R01 AI50529NIAID NIH HHS R01 AI58715NIAID NIH HHS R13 AI058790NIAID NIH HHS R37 AI050529
6 · The paper itself

Abstract

Chimpanzees in west central Africa (Pan troglodytes troglodytes) are known to harbor simian immunodeficiency viruses (SIVcpzPtt) that represent the closest relatives of human immunodeficiency virus type 1 (HIV-1); however, the number of SIVcpzPtt strains that have been fully characterized is still limited. Here, we report the complete nucleotide sequence of SIVcpzGAB2, a virus originally identified in 1989 in a chimpanzee (P. t. troglodytes) from Gabon. Analysis of this sequence reveals that SIVcpzGAB2 is a member of the SIVcpzPtt group of viruses, but that it differs from other SIVcpzPtt strains by exhibiting a highly divergent Env V3 loop with an unusual crown (NLSPGTT) containing a canonical N-linked glycosylation site, an unpaired cysteine residue in Env V4, and two late (L) domain motifs (PTAP and YPSL) in Gag p6. Moreover, phylogenetic analyses indicate evidence of recombination during the early divergence of SIVcpzPtt strains; in particular, part of the pol gene sequence of SIVcpzGAB2 appears to be derived from a previously unidentified SIVcpz lineage ancestral to HIV-1 group O. These data indicate extensive diversity among naturally occurring SIVcpzPtt strains and provide new insight into the origin of HIV-1 group O.

Indexed as

Genome, ViralAnimalsMolecular Sequence DataPan troglodytesPhylogenyRNA, ViralSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusRNA, Viral

Identifiers

PMID15650433
PMCPMC2692896
OpenAlexW2040670772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.