Evidence map›Paper›PMID 15650211›Full record

ArticleJournal of virology2005

Exposure of RNA templates and encapsidation of spliced viral RNA are influenced by the arginine-rich domain of human hepatitis B virus core antigen (HBcAg 165-173).

Sophie Le Pogam, Pong Kian Chua, Margaret Newman, Chiaho Shih

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 90 citations in OpenAlex.

  1. Hepatitis B Virus Nucleocapsid Assembly.Journal of molecular biology · 2025
    Review
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sophie Le PogamDepartment of Pathology, WHO Collaborating Center for Tropical Diseases, and Center for Biodefense and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston, TX 77555-0609, USA.
Pong Kian Chua
Margaret Newman
Chiaho Shih
The University of Texas Medical Branch at Galveston · US

Funding

PATHOGENESIS, CHRONICITY, AND MUTATIONS OF HEPATITIS BR01CA070336 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI SHIH, CHIAHO · 1997 to 2004
$1.6M
'IMMATURE SECRETION'VARIANTS OF HUMAN HEPATITIS B VIRUSR01CA084217 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI SHIH, CHIAHO · 2000 to 2004
$1.1M
NCI NIH HHS CA 84217NCI NIH HHS R01 CA070336NCI NIH HHS R01 CA084217NCI NIH HHS R01 CA 70336
6 · The paper itself

Abstract

Previously, human hepatitis B virus (HBV) mutant 164, which has a truncation at the C terminus of the HBV core antigen (HBcAg), was speculated to secrete immature genomes. For this study, we further characterized mutant 164 by different approaches. In addition to the 3.5-kb pregenomic RNA (pgRNA), the mutant preferentially encapsidated the 2.2-kb or shorter species of spliced RNA, which can be reverse transcribed into double-stranded DNA before virion secretion. We observed that mutant 164 produced less 2.2-kb spliced RNA than the wild type. Furthermore, it appeared to produce at least two different populations of capsids: one encapsidated a nuclease-sensitive 3.5-kb pgRNA while the other encapsidated a nuclease-resistant 2.2-kb spliced RNA. In contrast, the wild-type core-associated RNA appeared to be resistant to nuclease. When arginines and serines were systematically restored at the truncated C terminus, the core-associated DNA and nuclease-resistant RNA gradually increased in both size and signal intensity. Full protection of encapsidated pgRNA from nuclease was observed for HBcAg 1-171. A full-length positive-strand DNA phenotype requires positive charges at amino acids 172 and 173. Phosphorylation at serine 170 is required for optimal RNA encapsidation and a full-length positive-strand DNA phenotype. RNAs encapsidated in Escherichia coli by capsids of HBcAg 154, 164, and 167, but not HBcAg 183, exhibited nuclease sensitivity; however, capsid instability after nuclease treatment was observed only for HBcAg 164 and 167. A new hypothesis is proposed here to highlight the importance of a balanced charge density for capsid stability and intracapsid anchoring of RNA templates.

Indexed as

Gene Expression Regulation, ViralRNA SplicingTemplates, GeneticAmino Acid SequenceArginineCapsidDNA, ViralHepatitis B Core AntigensHumansMicrococcal NucleaseMolecular Sequence DataMutationRNA, ViralArginineDNA, ViralHepatitis B Core AntigensMicrococcal NucleaseRNA, Viral

Identifiers

PMID15650211
PMCPMC544126
OpenAlexW2066684551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.