Evidence map›Paper›PMID 15647502›Full record

ArticleNucleic acids research2005

The RNA ligands for mouse proline-rich RNA-binding protein (mouse Prrp) contain two consensus sequences in separate loop structure.

Tamaki Hori, Yusuke Taguchi, Seiichi Uesugi, Yasuyuki Kurihara

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  8. Protein acetylation and spermatogenesis.Reproductive system & sexual disorders : current research · 2013
    Article
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  13. Transcription and post-transcriptional regulation of spermatogenesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2010
    Review
  14. RNA recognition by the embryonic cell fate determinant and germline totipotency factor MEX-3.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  15. Retinoic acid-gated sequence-specific translational control by RARalpha.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tamaki HoriDepartment of Environment and Natural Sciences, Graduate School of Environment and Information Sciences, Yokohama National University Tokiwa-dai, Hodogaya, Yokohama 240-0851, Japan.
Yusuke Taguchi
Seiichi Uesugi
Yasuyuki Kurihara
Yokohama National University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mouse proline-rich RNA-binding protein (mPrrp) is a mouse ortholog of Xenopus Prrp, which binds to a vegetal localization element (VLE) in the 3'-untranslated region (3'-UTR) of Vg1 mRNA and is expected to be involved in the transport and/or localization of Vg1 mRNA to the vegetal cortex of oocytes. In mouse testis, mPrrp protein is abundantly expressed in the nuclei of pachytene spermatocytes and round spermatids, and shifts to the cytoplasm in elongating spermatids. To gain an insight into the function of mPrrp in male germ cells, we performed in vitro RNA selection (SELEX) to determine the RNA ligand sequence of mPrrp. This analysis revealed that many of the selected clones contained both of two conserved elements, AAAUAG and GU1-3AG. RNA-binding study on deletion mutants and secondary structure analyses of the selected RNA revealed that a two-loop structure containing the conserved elements is required for high-affinity binding to mPrrp. Furthermore, we found that the target mRNAs of Xenopus Prrp contain intact AAAUAG and GU1-3AG sequences in the 3'-UTR, suggesting that these binding sequences are shared by Prrps of Xenopus and mouse.

Indexed as

AnimalsBase SequenceConsensus SequenceLigandsMiceMolecular Sequence DataNucleic Acid ConformationProtein BindingRNARNA-Binding ProteinsDAZAP1 protein, humanDazap1 protein, mouseLigandsRNARNA-Binding Proteins

Identifiers

PMID15647502
PMCPMC546141
OpenAlexW2151101269

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.