Evidence map›Paper›PMID 15643071›Full record

ArticleEukaryotic cell2005

Demonstration of loss of heterozygosity by single-nucleotide polymorphism microarray analysis and alterations in strain morphology in Candida albicans strains during infection.

Anja Forche, Georgiana May, P T Magee

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. Article
  3. Loss of Heterozygosity and Its Importance in Evolution.Journal of molecular evolution · 2023
    Review
  4. Article
  5. Molecular typing of multi-drug resistant Candida albicans isolated from the Segamat community, Malaysia.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  6. Review
  7. Drug resistance and tolerance in fungi.Nature reviews. Microbiology · 2020
    Review
  8. Review
  9. Mechanisms of genome evolution in Candida albicans.Current opinion in microbiology · 2019
    Review
  10. Article
  11. Flow Cytometry Analysis of Fungal Ploidy.Current protocols in microbiology · 2018
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Molecular fingerprints to identify Candida species.BioMed research international · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Anja ForcheDepartment of Genetics, Cell Biology and Development, University of Minnesota, 6-160 Jackson Hall, 321 Church St. SE, Minneapolis, MN 55455, USA.
Georgiana May
P T Magee
University of Minnesota · US

Funding

GENOMIC REARRANGEMENTS AND REGULATION OF PATHOGENR01AI046351 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MAGEE, PAUL T. · 1999 to 2003
$805k
NIAID NIH HHS AI46351NIAID NIH HHS R01 AI046351
6 · The paper itself

Abstract

Candida albicans is a diploid yeast with a predominantly clonal mode of reproduction, and no complete sexual cycle is known. As a commensal organism, it inhabits a variety of niches in humans. It becomes an opportunistic pathogen in immunocompromised patients and can cause both superficial and disseminated infections. It has been demonstrated that genome rearrangement and genetic variation in isolates of C. albicans are quite common. One possible mechanism for generating genome-level variation among individuals of this primarily clonal fungus is mutation and mitotic recombination leading to loss of heterozygosity (LOH). Taking advantage of a recently published genome-wide single-nucleotide polymorphism (SNP) map (A. Forche, P. T. Magee, B. B. Magee, and G. May, Eukaryot. Cell 3:705-714, 2004), an SNP microarray was developed for 23 SNP loci residing on chromosomes 5, 6, and 7. It was used to examine 21 strains previously shown to have undergone mitotic recombination at the GAL1 locus on chromosome 1 during infection in mice. In addition, karyotypes and morphological properties of these strains were evaluated. Our results show that during in vivo passaging, LOH events occur at observable frequencies, that such mitotic recombination events occur independently in different loci across the genome, and that changes in karyotypes and alterations of phenotypic characteristics can be observed alone, in combination, or together with LOH.

Indexed as

AllelesAnimalsCandida albicansDNA PrimersGenotypeHaplotypesKaryotypingLoss of HeterozygosityMiceMitosisModels, GeneticMultigene FamilyNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisOligonucleotidesPhenotypeDNA PrimersOligonucleotidesRecombinant Proteins

Identifiers

PMID15643071
PMCPMC544165
OpenAlexW2100581772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.