ArticleGenome biology2005
Using ontologies to describe mouse phenotypes.
Article in Genome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
130 citing papers in PubMed.
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- The Unified Phenotype Ontology : a framework for cross-species integrative phenomics.Genetics · 2025Article
- Automated annotation of scientific texts for ML-based keyphrase extraction and validation.Database : the journal of biological databases and curation · 2024Article
- The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics.bioRxiv : the preprint server for biology · 2024Article
- GallOnt: An ontology for plant gall phenotypes.Biodiversity data journal · 2024Article
- The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mammalian genome : official journal of the International Mammalian Genome Society · 2023Article
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- The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv : the preprint server for biology · 2023Article
- Toward a data infrastructure for the Plant Cell Atlas.Plant physiology · 2023Review
- Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.Systematic biology · 2022Article
- Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database : the journal of biological databases and curation · 2022Article
- HistoML, a markup language for representation and exchange of histopathological features in pathology images.Scientific data · 2022Article
- Contribution of model organism phenotypes to the computational identification of human disease genes.Disease models & mechanisms · 2022Article
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- Establishing a Common Nutritional Vocabulary - From Food Production to Diet.Frontiers in nutrition · 2022Article
- FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example.Journal of biomedical semantics · 2021Article
- Semantic similarity and machine learning with ontologies.Briefings in bioinformatics · 2021Review
- Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.Bioinformatics (Oxford, England) · 2020Article
70 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
The mouse is an important model of human genetic disease. Describing phenotypes of mutant mice in a standard, structured manner that will facilitate data mining is a major challenge for bioinformatics. Here we describe a novel, compositional approach to this problem which combines core ontologies from a variety of sources. This produces a framework with greater flexibility, power and economy than previous approaches. We discuss some of the issues this approach raises.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.