Evidence map›Paper›PMID 15640442›Full record

ArticleNucleic acids research2005

Contextual interactions determine whether the Drosophila homeodomain protein, Vnd, acts as a repressor or activator.

Zhongxin Yu, Li-Jyun Syu, Dervla M Mellerick

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 136 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Zhongxin YuPathology Department, University of Michigan 8301B MSRB III, 1150 W. Medical Center Drive, Ann Arbor, MI 48109-0646, USA.
Li-Jyun Syu
Dervla M Mellerick
University of Michigan–Ann Arbor · US

Funding

NICHD NIH HHS R01 HD0348403
6 · The paper itself

Abstract

At the molecular level, members of the NKx2.2 family of transcription factors establish neural compartment boundaries by repressing the expression of homeobox genes specific for adjacent domains [Muhr et al. (2001) Cell, 104, 861-873; Weiss et al. (1998) Genes Dev., 12, 3591-3602]. The Drosophila homologue, vnd, interacts genetically with the high-mobility group protein, Dichaete, in a manner suggesting co-operative activation [Zhao and Skeath (2002) Development, 129, 1165-1174]. However, evidence for direct interactions and transcriptional activation is lacking. Here, we present molecular evidence for the interaction of Vnd and Dichaete that leads to the activation of target gene expression. Two-hybrid interaction assays indicate that Dichaete binds the Vnd homeodomain, and additional Vnd sequences stabilize this interaction. In addition, Vnd has two activation domains that are typically masked in the intact protein. Whether vnd can activate or repress transcription is context-dependent. Full-length Vnd, when expressed as a Gal4 fusion protein, acts as a repressor containing multiple repression domains. A divergent domain in the N-terminus, not found in vertebrate Vnd-like proteins, causes the strongest repression. The co-repressor, Groucho, enhances Vnd repression, and these two proteins physically interact. The data presented indicate that the activation and repression domains of Vnd are complex, and whether Vnd functions as a transcriptional repressor or activator depends on both intra- and inter-molecular interactions.

Indexed as

AnimalsBasic Helix-Loop-Helix ProteinsCell LineDNA-Binding ProteinsDrosophila ProteinsHigh Mobility Group ProteinsHomeodomain ProteinsProtein Structure, TertiaryRepressor ProteinsSOX Transcription FactorsTrans-ActivatorsTranscription FactorsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsD protein, DrosophilaDrosophila Proteinsgro protein, DrosophilaHigh Mobility Group ProteinsHomeodomain ProteinsRepressor ProteinsSOX Transcription FactorsTrans-ActivatorsTranscription Factorsvnd protein, Drosophila

Identifiers

PMID15640442
PMCPMC546129
OpenAlexW2128381684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.