ArticleJournal of molecular evolution2004
Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids.
Article in Journal of molecular evolution, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
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40 citing papers in PubMed, 124 citations in OpenAlex.
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- First identification report for amino acid composition of red algaeBiotechnologia · 2024Article
- Progress, challenge and prospect of plant plastome annotation.Frontiers in plant science · 2023Review
- Comparative analysis of Thalassionema chloroplast genomes revealed hidden biodiversity.BMC genomics · 2022Article
- Phycobiliproteins: Structural aspects, functional characteristics, and biotechnological perspectives.Computational and structural biotechnology journal · 2022Review
- Biosynthesis and characterization of a recombinant eukaryotic allophycocyanin using prokaryotic accessory enzymes.MicrobiologyOpen · 2020Article
- The first plastid genome of a filamentous taxon 'Bangia' sp. OUCPT-01 in the Bangiales.Scientific reports · 2018Article
- Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats.PloS one · 2018Article
- Origin and evolutionary history of freshwater Rhodophyta: further insights based on phylogenomic evidence.Scientific reports · 2017Article
- Complete chloroplast genome of Gracilaria firma (Gracilariaceae, Rhodophyta), with discussion on the use of chloroplast phylogenomics in the subclass Rhodymeniophycidae.BMC genomics · 2017Article
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- Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants.BMC biology · 2016Article
- Mitochondrial and plastid genome analysis of the marine red algaMitochondrial DNA. Part B, Resources · 2016Article
- Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes.Scientific reports · 2016Article
- Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes.Genome biology and evolution · 2015Article
- A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene.BioMed research international · 2015Article
- The eukaryotic tree of life from a global phylogenomic perspective.Cold Spring Harbor perspectives in biology · 2014Review
- Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.Journal of plant research · 2014Article
- Development of chloroplast simple sequence repeats (cpSSRs) for the intraspecific study of Gracilaria tenuistipitata (Gracilariales, Rhodophyta) from different populations.BMC research notes · 2014Article
- Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy.Omics : a journal of integrative biology · 2013Review
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We sequenced to completion the circular plastid genome of the red alga Gracilaria tenuistipitata var. liui. This is the first plastid genome sequence from the subclass Florideophycidae (Rhodophyta). The genome is composed of 183,883 bp and contains 238 predicted genes, including a single copy of the ribosomal RNA operon. Comparisons with the plastid genome of Porphyra pupurea reveal strong conservation of gene content and order, but we found major genomic rearrangements and the presence of coding regions that are specific to Gracilaria. Phylogenetic analysis of a data set of 41 concatenated proteins from 23 plastid and two cyanobacterial genomes support red algal plastid monophyly and a specific evolutionary relationship between the Florideophycidae and the Bangiales. Gracilaria maintains a surprisingly ancient gene content in its plastid genome and, together with other Rhodophyta, contains the most complete repertoire of plastid genes known in photosynthetic eukaryotes.
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