ArticlePlant molecular biology2004
A unigene catalogue of 5700 expressed genes in cassava.
Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Advances in Genetic Analysis and Breeding of Cassava (Plants (Basel, Switzerland) · 2022Review
- Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae.Molecular plant pathology · 2021Review
- The role of type III effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity.Molecular plant pathology · 2018Article
- Transcriptome response of cassava leaves under natural shade.Scientific reports · 2016Article
- Characters related to higher starch accumulation in cassava storage roots.Scientific reports · 2016Article
- Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Review
- Increased expression of native cytosolic Cu/Zn superoxide dismutase and ascorbate peroxidase improves tolerance to oxidative and chilling stresses in cassava (Manihot esculenta Crantz).BMC plant biology · 2014Article
- Identification and computational annotation of genes differentially expressed in pulp development of Cocos nucifera L. by suppression subtractive hybridization.BMC plant biology · 2014Article
- Phenotypic approaches to drought in cassava: review.Frontiers in physiology · 2013Article
- Genome-wide discovery and information resource development of DNA polymorphisms in cassava.PloS one · 2013Article
- Top 10 plant pathogenic bacteria in molecular plant pathology.Molecular plant pathology · 2012Review
- Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress.BMC genomics · 2012Article
- An ordered EST catalogue and gene expression profiles of cassava (Manihot esculenta) at key growth stages.Plant molecular biology · 2010Article
- In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1.BMC microbiology · 2010Article
- Putative storage root specific promoters from cassava and yam: cloning and evaluation in transgenic carrots as a model system.Plant cell reports · 2010Article
- Article
- Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection.BMC plant biology · 2009Article
- Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response.BMC plant biology · 2007Article
- Comparative analysis of expressed genes from cacao meristems infected by Moniliophthora perniciosa.Annals of botany · 2007Article
Corrections and comments
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Two economically important characters, starch content and cassava bacterial blight resistance, were targeted to generate a large collection of cassava ESTs. Two libraries were constructed from cassava root tissues of varieties with high and low starch contents. Other libraries were constructed from plant tissues challenged by the pathogen Xanthomonas axonopodis pv.manihotis. We report here the single pass sequencing of 11,954 cDNA clones from the 5' ends, including 111 from the 3' ends. Cluster analysis permitted the identification of a unigene set of 5,700 sequences. Sequence analyses permitted the assignment of a putative functional category for 37% of sequences whereas approximately 16% sequences did not show any significant similarity with other proteins present in the database and therefore can be considered as cassava specific genes. A group of genes belonging to a large multigene family was identified. We characterize a set of genes detected only in infected libraries putatively involved in the defense response to pathogen infection. By comparing two libraries obtained from cultivars contrasting in their starch content a group of genes associated to starch biosynthesis and differentially expressed was identified. This is the first large cassava EST resource developed today and publicly available thus making a significant contribution to genomic knowledge of cassava.
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