Evidence map›Paper›PMID 15626706›Full record

ArticleBiophysical journal2005

The cysteine residues of HIV-1 capsid regulate oligomerization and cyclophilin A-induced changes.

Marjorie Bon Homme, Carol Carter, Suzanne Scarlata

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Marjorie Bon HommeDepartment of Physiology and Biophysics, State University of New York at Stony Brook, New York, USA.
Carol Carter
Suzanne Scarlata
Stony Brook University · US

Funding

Gag Protein Interactions Important for HIV AssemblyR01GM048294 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CARTER, CAROL A · 1993 to 2004
$1.5M
PHYSICAL ELUCIDATION OF VIRUS ASSEMBLYR01GM058271 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SCARLATA, SUZANNE F · 1998 to 2001
$382k
NIGMS NIH HHS GM48294NIGMS NIH HHS GM58271NIGMS NIH HHS R01 GM048294
6 · The paper itself

Abstract

Assembly of the HIV-1 virus involves, in part, strong interactions between the capsid (CA) domains of the Gag polyprotein. During maturation, the core of HIV-1 virions undergoes profound morphological changes due primarily to proteolysis of the CA domain from other Gag domains which may allow for more efficient disassembly of the viral core in the early stages of infection. The host protein cyclophilin A (CypA), a cis-trans prolyl isomerase, in some way seems to assist in this assembly/disassembly process. Using an unproteolyzed construct of CA, we show that binding of CypA induces a large-scale conformational change in CA that is independent of its cis-trans prolyl isomerase activity. This change appears to be mediated by Cys-198 of CA since mutation to Ala renders CypA unable to induce this change and alters the kinetics and stability of protein cores that may ultimately result in inefficient disassembly of viral cores. Alternately, mutation of the second CA Cys (C218A) allows for CypA-induced conformational changes but alters the kinetics and morphology of the protein cores that may ultimately result in inefficient assembly of viral cores. These studies show the importance of the CA Cys residues in mediating the contacts needed for viral assembly and disassembly.

Indexed as

Virus AssemblyAmino Acid SubstitutionBinding SitesCapsid ProteinsCyclophilin ACysteineDimerizationHIV-1KineticsMultiprotein ComplexesMutagenesis, Site-DirectedProtein BindingRecombinant ProteinsStructure-Activity RelationshipCapsid ProteinsCyclophilin ACysteineMultiprotein ComplexesRecombinant Proteins

Identifiers

PMID15626706
PMCPMC1305260
OpenAlexW2057209015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.