Evidence map›Paper›PMID 15623575›Full record

ArticleThe Journal of experimental medicine2005

Positive selection of the peripheral B cell repertoire in gut-associated lymphoid tissues.

Ki-Jong Rhee, Paul J Jasper, Periannan Sethupathi, Malathy Shanmugam, Dennis Lanning, Katherine L Knight

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of experimental medicine, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Alternative pathways for the development of lymphoid structures in humans.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. The wide utility of rabbits as models of human diseases.Experimental & molecular medicine · 2018
    Review
  7. Review
  8. Article
  9. Review
  10. Chemokine-mediated B cell trafficking during early rabbit GALT development.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Mechanism for pre-B cell loss in VH-mutant rabbits.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  16. Article
  17. B cell development in GALT: role of bacterial superantigen-like molecules.Journal of immunology (Baltimore, Md. : 1950) · 2010
    Article
  18. Characterization of rabbit CD5 isoforms.Molecular immunology · 2009
    Article
  19. Article
  20. Microbial induction of B and T cell areas in rabbit appendix.Developmental and comparative immunology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ki-Jong RheeDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL 60153, USA.
Paul J Jasper
Periannan Sethupathi
Malathy Shanmugam
Dennis Lanning
Katherine L Knight
Loyola University Chicago · US

Funding

Somatic Diversification of Immunoglobulin Genes in GALTR01AI050260 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI KNIGHT, KATHERINE L. · 2001 to 2015
$5.1M
NIAID NIH HHS AI150260NIAID NIH HHS R01 AI050260
6 · The paper itself

Abstract

Gut-associated lymphoid tissues (GALTs) interact with intestinal microflora to drive GALT development and diversify the primary antibody repertoire; however, the molecular mechanisms that link these events remain elusive. Alicia rabbits provide an excellent model to investigate the relationship between GALT, intestinal microflora, and modulation of the antibody repertoire. Most B cells in neonatal Alicia rabbits express V(H)n allotype immunoglobulin (Ig)M. Within weeks, the number of V(H)n B cells decreases, whereas V(H)a allotype B cells increase in number and become predominant. We hypothesized that the repertoire shift from V(H)n to V(H)a B cells results from interactions between GALT and intestinal microflora. To test this hypothesis, we surgically removed organized GALT from newborn Alicia pups and ligated the appendix to sequester it from intestinal microflora. Flow cytometry and nucleotide sequence analyses revealed that the V(H)n to V(H)a repertoire shift did not occur, demonstrating the requirement for interactions between GALT and intestinal microflora in the selective expansion of V(H)a B cells. By comparing amino acid sequences of V(H)n and V(H)a Ig, we identified a putative V(H) ligand binding site for a bacterial or endogenous B cell superantigen. We propose that interaction of such a superantigen with V(H)a B cells results in their selective expansion.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesB-LymphocytesCalciumCloning, MolecularDNA, ComplementaryFlow CytometryFluorescent Antibody TechniqueGenes, ImmunoglobulinImmunoglobulin AllotypesImmunoglobulin Class SwitchingImmunoglobulin MImmunoglobulin Variable RegionLymphoid TissueCalciumDNA, ComplementaryImmunoglobulin AllotypesImmunoglobulin MImmunoglobulin Variable RegionSuperantigens

Identifiers

PMID15623575
PMCPMC2212770
OpenAlexW2158100265

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.