Evidence map›Paper›PMID 15621569›Full record

ArticleAutoimmunity

Ongoing immunoglobulin class switch DNA recombination in lupus B cells: analysis of switch regulatory regions.

Shiquan Liu, Andrea Cerutti, Paolo Casali, Mary K Crow

Abstract read
In one paragraph

Article in Autoimmunity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Pretransplant IgG reactivity to apoptotic cells correlates with late kidney allograft loss.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2014
    Article
  7. Gonadal steroids and humoral immunity.Nature reviews. Endocrinology · 2013
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Shiquan LiuMary Kirkland Center for Lupus Research, Hospital for Special Surgery, 535 East 70th Street, New York, NY 10021, USA.
Andrea CeruttiDepartments of Pathology and Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY 10021, USA.
Paolo Casali *The Center for Immunology, 3028 Hewitt Hall, University of California, Irvine, CA 92697-4120, USA.
Mary K Crow *Mary Kirkland Center for Lupus Research, Hospital for Special Surgery, 535 East 70th Street, New York, NY 10021, USA.
Hospital for Special Surgery · USCornell University · US

Funding

Immunoglobulin class switch DNA recombinationR01AI045011 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 2000 to 2011
$3.8M
SOMATIC HYPERMUTATION IN HUMAN B CELLSR01AR040908 · NIAMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 1992 to 2005
$1.8M
CD40 LIGAND IN SYSTEMIC LUPUS ERYTHEMATOSUSR01AI042185 · NIAID · HOSPITAL FOR SPECIAL SURGERY · PI CROW, MARY K · 1998 to 2002
$859k
ROLE OF CD30: CD153-PATHOGENESIS OF RHEUMATOID ARTHRITISR01AR047872 · NIAMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CERUTTI, ANDREA · 2001 to 2003
$507k
BLyS, APRIL and antibody production in HIV infectionR21AI057130 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CERUTTI, ANDREA · 2003 to 2004
$504k
NIAID NIH HHS R01 AI045011NIAID NIH HHS R01 AI 42185NIAID NIH HHS R01 AI 45011NIAID NIH HHS R21 AI057130NIAMS NIH HHS R01 AR040908NIAMS NIH HHS R01 AR047872NIAMS NIH HHS R01 AR 40908
6 · The paper itself

Abstract

Inflammation and tissue damage in systemic lupus erythematosus (SLE) are mediated by class-switched autoantibodies reactive with nucleic acids, nucleic acid-binding proteins, phospholipids and other self-antigens. While some healthy individuals produce IgM antibodies with specificities similar to those of lupus patients, immunoglobulin class switching to mature downstream isotypes appears to be required for the generation of pathogenic autoantibodies. To characterize the cellular and molecular basis of pathogenic autoantibody production in SLE, we studied the capacity of peripheral blood B cells of naive phenotype from patients with SLE, rheumatoid arthritis (RA) or healthy control subjects to spontaneously switch to IgG and IgA. In addition, we determined the DNA sequences of the upstream evolutionary conserved sequence (ECS)-Igamma promoter regulatory regions that control germline IH-CH transcription and class switch DNA recombination (CSR) to IgG1, IgG2 and IgG4. IgM+IgD+ B cells from patients with SLE, but not those from RA or healthy control subjects, underwent spontaneous CSR, as assessed by expression of germline Igamma1-Cgamma1, Igamma2-Cgamma2, Igamma3-Cgamma3, Igamma4-Cgamma4 and Ialpha1-Calpha1 transcripts, mature (switched) VHDJH-Cgamma1, VHDJH-Cgamma2, VHDJH-Cgamma3 and VHDJH-Calpha1 transcripts and secreted IgG and IgA. Although polymorphic DNA sequences were identified in the ECS-Igamma1, ECS-Igamma2 and ECS-Igamma4 promoter regions, the transcription factor-binding sites that mediate germline Igamma-Cgamma transcription were conserved in patients and controls. However, distinct patterns of nuclear protein binding to an ECS-Igamma promoter sequence that contains both positive and negative regulatory elements were observed in SLE patients and controls. These results support a role for exogenous signals, such as through CD40 ligation, rather than altered genomic sequence, in the increased production of class switched autoantibodies in SLE.

Indexed as

Gene Rearrangement, B-LymphocyteBase SequenceGene Expression RegulationGenes, RegulatorHumansImmunoglobulin Class SwitchingImmunoglobulin DImmunoglobulin IsotypesImmunoglobulin MLupus Erythematosus, SystemicMolecular Sequence DataPolymorphism, GeneticPromoter Regions, GeneticImmunoglobulin DImmunoglobulin IsotypesImmunoglobulin M

Identifiers

PMID15621569
PMCPMC4624307
OpenAlexW2096631129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.