Evidence map›Paper›PMID 15620346›Full record

ArticleRetrovirology2004

Modulating HIV-1 replication by RNA interference directed against human transcription elongation factor SPT5.

Yueh-Hsin Ping, Chia-Ying Chu, Hong Cao, Jean-Marc Jacque, Mario Stevenson, Tariq M Rana

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  9. Article
  10. Toward a durable anti-HIV gene therapy based on RNA interference.Annals of the New York Academy of Sciences · 2009
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. RNAi therapy for HIV infection: principles and practicalities.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2007
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Yueh-Hsin PingDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA. yhping@ym.edu.tw
Chia-Ying Chu
Hong Cao
Jean-Marc Jacque
Mario Stevenson
Tariq M Rana
University of Massachusetts Chan Medical School · USNational Yang Ming Chiao Tung University · TW

Funding

Mechanisms of innate immunity against HIVR01AI043198 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RANA, TARIQ M · 1998 to 2014
$4.7M
ROLE OF HIV-1 GAG MA IN VIRAL ENTRYR01AI032890 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEVENSON, MARIO · 1992 to 2011
$3.3M
Exploring the Role of Vif Antagonists in Preventing Sexual HIV TransmissionR33AI088595 · NIAID · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI STEVENSON, MARIO · 2013 to 2015
$1.3M
NCRR NIH HHS RR11489NIAID NIH HHS AI32890NIAID NIH HHS AI43198NIAID NIH HHS R01 AI032890NIAID NIH HHS R01 AI043198NIAID NIH HHS R33 AI088595
6 · The paper itself

Abstract

backgroundSeveral cellular positive and negative elongation factors are involved in regulating RNA polymerase II processivity during transcription elongation in human cells. In recruiting several of these regulatory factors to the 5' long terminal repeat (LTR) promoter during transcription elongation, HIV-1 modulates replication of its genome in a process mediated by the virus-encoded transactivator Tat. One particular cellular regulatory factor, DSIF subunit human SPT5 (hSpt5), has been implicated in both positively and negatively regulating transcriptional elongation but its role in Tat transactivation in vivo and in HIV-1 replication has not been completely elucidated.

resultsTo understand the in vivo function of hSpt5 and define its role in Tat transactivation and HIV-1 replication, we used RNA interference (RNAi) to specifically knockdown hSpt5 expression by degrading hSpt5 mRNA. Short-interfering RNA (siRNA) designed to target hSpt5 for RNAi successfully resulted in knockdown of both hSpt5 mRNA and protein levels, and did not significantly affect cell viability. In contrast to hSpt5 knockdown, siRNA-mediated silencing of human mRNA capping enzyme, a functionally important hSpt5-interacting cellular protein, was lethal and showed a significant increase in cell death over the course of the knockdown experiment. In addition, hSpt5 knockdown led to significant decreases in Tat transactivation and inhibited HIV-1 replication, indicating that hSpt5 was required for mediating Tat transactivation and HIV-1 replication.

conclusionsThe findings presented here showed that hSpt5 is a bona fide positive regulator of Tat transactivation and HIV-1 replication in vivo. These results also suggest that hSpt5 function in transcription regulation and mRNA capping is essential for a subset of cellular and viral genes and may not be required for global gene expression.

Indexed as

Gene Expression Regulation, ViralGene Products, tatHIV-1HumansNuclear ProteinsRNA InterferenceRNA, Messengertat Gene Products, Human Immunodeficiency VirusTerminal Repeat SequencesTranscriptional ActivationTranscriptional Elongation FactorsVirus ReplicationGene Products, tatNuclear ProteinsRNA, MessengerSUPT5H protein, humantat Gene Products, Human Immunodeficiency VirusTranscriptional Elongation Factors

Identifiers

PMID15620346
PMCPMC545048
OpenAlexW2096289350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.