Evidence map›Paper›PMID 15619293›Full record

ArticleProteomics2005

Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.

Yi Zhang, Tiansong Wang, Weibin Chen, Ozlem Yilmaz, Yoonsuk Park, Il-Young Jung, Murray Hackett, Richard J Lamont

Abstract read
In one paragraph

Article in Proteomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. cAMP-independent Crp homolog adds to the multi-layer regulatory network inFrontiers in cellular and infection microbiology · 2025
    Article
  3. Article
  4. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Microbiology and treatment of acute apical abscesses.Clinical microbiology reviews · 2013
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Porphyromonas gingivalis strain diversity.Journal of clinical microbiology · 2009
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yi ZhangDepartment of Microbiology, University of Wahington, Seattle, WA 98195, USA.
Tiansong Wang
Weibin Chen
Ozlem Yilmaz
Yoonsuk Park
Il-Young Jung
Murray Hackett
Richard J Lamont

Funding

P GINGIVALIS INTERACTIONS WITH GINGIVAL EPITHELIAL CELLSR01DE011111 · NIDCR · UNIVERSITY OF WASHINGTON · PI HARIBABU BODDULURI, Richard J Lamont · 1995 to 2026
$5.4M
DNA Microchips: Detecting Microbes in Oral Cavity FluidsU01DE014955 · NIDCR · UNIVERSITY OF WASHINGTON · PI STAHL, DAVID A · 2002 to 2005
$3.9M
Proteomics of Porphyromonas gingivalis interactions with Fusobacterium nucleatumR01DE014372 · NIDCR · UNIVERSITY OF WASHINGTON · PI HACKETT, MURRAY · 2003 to 2014
$3.7M
P.gingivalis Interactions with Gingival Epithelial CellsR37DE011111 · NIDCR · UNIVERSITY OF LOUISVILLE · PI LAMONT, RICHARD J · 2009 to 2018
$3.6M
Proteomics of P. gingivalis interactions with F. nucleatum and S. gordoniiR56DE014372 · NIDCR · UNIVERSITY OF WASHINGTON · PI HACKETT, MURRAY · 2009 to 2015
$1.2M
Epithelial Cell Sensing and Responses to P. gingivalisK08DE014168 · NIDCR · UNIVERSITY OF WASHINGTON · PI YILMAZ, OZLEM · 2001 to 2005
$630k
NIDCR NIH HHS DE11111NIDCR NIH HHS DE14168NIDCR NIH HHS DE14372NIDCR NIH HHS DE14955NIDCR NIH HHS K08 DE014168NIDCR NIH HHS R01 DE011111NIDCR NIH HHS R01 DE014372NIDCR NIH HHS R37 DE011111NIDCR NIH HHS R56 DE014372NIDCR NIH HHS U01 DE014955
6 · The paper itself

Abstract

The human oral pathogen Porphyromonas gingivalis colonizes the gingival crevice and invades gingival epithelial cells. Multidimensional capillary high-performance liquid chromatography coupled with tandem mass spectrometry and two-dimensional gel electrophoresis were used to analyze the proteome of P. gingivalis as it adapts to a set of experimental conditions designed to reflect important features of an epithelial cell environment. 1014 proteins (46% of the total theoretical proteome) were identified in four independent analyses; 479 of these proteins showed evidence of differential expression after exposure of P. gingivalis to either conditioned epithelial cell growth medium or control conditions: i.e., they were only detected under one set of conditions. Moreover, 276 genes annotated as hypothetical were found to encode expressed proteins. Among the proteins up-regulated in the presence of epithelial cell components were a homolog of the internalin proteins of Listeria monocytogenes and subunits of the ATP-dependent Clp protease complex. Insertional inactivation of clpP, encoding the Clp proteolytic subunit, resulted in approximately a 50% reduction in invasion of P. gingivalis. These results suggest that adaptation to an epithelial cell environment induces a major shift in the expressed proteome of the organism. Furthermore, ClpP, that is up-regulated in this environment, is required for optimal invasive activity of P. gingivalis.

Indexed as

Bacterial AdhesionBacterial ProteinsCells, CulturedChromatography, High Pressure LiquidElectrophoresis, Gel, Two-DimensionalEndopeptidase ClpEpithelial CellsGene Expression ProfilingGingivaHumansMass SpectrometryMutationPorphyromonas gingivalisProtein Array AnalysisProteomeUp-RegulationBacterial ProteinsEndopeptidase ClpProteome

Identifiers

PMID15619293
PMCPMC2651681

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.