Evidence map›Paper›PMID 15618428›Full record

ArticlePlant physiology2005

Gene expression programs during Brassica oleracea seed maturation, osmopriming, and germination are indicators of progression of the germination process and the stress tolerance level.

Yasutaka Soeda, Maurice C J M Konings, Oscar Vorst, Adele M M L van Houwelingen, Geert M Stoopen, Chris A Maliepaard, Jan Kodde, Raoul J Bino, Steven P C Groot, Apolonia H M van der Geest

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In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 209 citations in OpenAlex.

  1. Review
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  5. Review
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  12. Overview of the Role of Cell Wall DUF642 Proteins in Plant Development.International journal of molecular sciences · 2019
    Review
  13. Article
  14. Regulation of α-expansins genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  15. New Insight on Water Status in GerminatingInternational journal of molecular sciences · 2019
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yasutaka SoedaPlant Research International B.V., 6700 AA Wageningen, The Netherlands.
Maurice C J M Konings
Oscar Vorst
Adele M M L van Houwelingen
Geert M Stoopen
Chris A Maliepaard
Jan Kodde
Raoul J Bino
Steven P C Groot
Apolonia H M van der Geest

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During seed maturation and germination, major changes in physiological status, gene expression, and metabolic events take place. Using chlorophyll sorting, osmopriming, and different drying regimes, Brassica oleracea seed lots of different maturity, stress tolerance, and germination behavior were created. Through careful physiological analysis of these seed lots combined with gene expression analysis using a dedicated cDNA microarray, gene expression could be correlated to physiological processes that occurred within the seeds. In addition, gene expression was studied during early stages of seed germination, prior to radicle emergence, since very little detailed information of gene expression during this process is available. During seed maturation expression of many known seed maturation genes, such as late-embryogenesis abundant or storage-compound genes, was high. Notably, a small but distinct subgroup of the maturation genes was found to correlate to seed stress tolerance in osmoprimed and dried seeds. Expression of these genes rapidly declined during priming and/or germination in water. The majority of the genes on the microarray were up-regulated during osmopriming and during germination on water, confirming the hypothesis that during osmopriming, germination-related processes are initiated. Finally, a large group of genes was up-regulated during germination on water, but not during osmopriming. These represent genes that are specific to germination in water. Germination-related gene expression was found to be partially reversible by physiological treatments such as slow drying of osmoprimed seeds. This correlated to the ability of seeds to withstand stress.

Indexed as

BrassicaGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGerminationOligonucleotide Array Sequence AnalysisOxidative StressSeedsTime FactorsWaterWater

Identifiers

PMID15618428
PMCPMC548865
OpenAlexW1972113730

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.