Evidence map›Paper›PMID 15616579›Full record

ArticleThe EMBO journal2005

Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR.

Christoph Bächler, Philipp Schneider, Priska Bähler, Ariel Lustig, Bernhard Erni

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The reliance of glycerol utilization by Cupriavidus necator on COApplied microbiology and biotechnology · 2022
    Article
  7. Gene-gene relationships in anMicrobial genomics · 2021
    Article
  8. Comparative Whole Genome Analysis ofFrontiers in microbiology · 2021
    Article
  9. Opening a Novel Biosynthetic Pathway to Dihydroxyacetone and Glycerol inInternational journal of molecular sciences · 2020
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Regulation ofEcoSal Plus · 2017
    Review
  16. Article
  17. Identification of a two-component fatty acid kinase responsible for host fatty acid incorporation by Staphylococcus aureus.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christoph BächlerDepartement für Chemie und Biochemie, Universität Bern, Bern, Switzerland.
Philipp Schneider
Priska Bähler
Ariel Lustig
Bernhard Erni
University of Bern · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dihydroxyacetone (Dha) kinases are a sequence-conserved family of enzymes, which utilize either ATP (in animals, plants, bacteria) or the bacterial phosphoenolpyruvate carbohydrate phosphotransferase system (PTS) as a source of high-energy phosphate. The PTS-dependent kinase of Escherichia coli consists of three subunits: DhaK contains the Dha binding site, DhaL contains ADP as cofactor for the double displacement of phosphate from DhaM to Dha, and DhaM provides a phospho-histidine relay between the PTS and DhaL::ADP. DhaR is a transcription activator belonging to the AAA+ family of enhancer binding proteins. It stimulates transcription of the dhaKLM operon from a sigma70 promoter and autorepresses dhaR transcription. Genetic and biochemical studies indicate that the enzyme subunits DhaL and DhaK act antagonistically as coactivator and corepressor of the transcription activator by mutually exclusive binding to the sensing domain of DhaR. In the presence of Dha, DhaL is dephosphorylated and DhaL::ADP displaces DhaK and stimulates DhaR activity. In the absence of Dha, DhaL::ADP is converted by the PTS to DhaL::ATP, which does not bind to DhaR.

Indexed as

Gene Expression Regulation, BacterialGene Expression Regulation, EnzymologicAmino Acid SequenceBlotting, WesternCatalytic DomainChromatography, GelDNA-Binding ProteinsElectrophoresis, Polyacrylamide GelEscherichia coliEscherichia coli ProteinsMolecular Sequence DataOperonPhosphotransferases (Alcohol Group Acceptor)Protein BindingSequence Homology, Amino AcidTrans-ActivatorsDhaR protein, E coliDNA-Binding ProteinsEscherichia coli Proteinsglycerone kinasePhosphotransferases (Alcohol Group Acceptor)Trans-Activators

Identifiers

PMID15616579
PMCPMC545809
OpenAlexW2144836423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.