Evidence map›Paper›PMID 15613638›Full record

ArticleBiophysical journal2005

lambda-Repressor oligomerization kinetics at high concentrations using fluorescence correlation spectroscopy in zero-mode waveguides.

K T Samiee, M Foquet, L Guo, E C Cox, H G Craighead

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Gold Ion Beam Milled Gold Zero-Mode Waveguides.Nanomaterials (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Vertical nanopillars for highly localized fluorescence imaging.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

K T SamieeSchool of Applied & Engineering Physics, Cornell University, Ithaca, New York 14853, USA.
M Foquet
L Guo
E C Cox
H G Craighead

Funding

SEQUENCING DNA IN NANOFABRICATED ARRAYSR01HG001506 · NHGRI · PRINCETON UNIVERSITY · PI COX, EDWARD C · 1996 to 2007
$5.1M
NHGRI NIH HHS HG001506NHGRI NIH HHS R01 HG001506
6 · The paper itself

Abstract

Fluorescence correlation spectroscopy (FCS) has demonstrated its utility for measuring transport properties and kinetics at low fluorophore concentrations. In this article, we demonstrate that simple optical nanostructures, known as zero-mode waveguides, can be used to significantly reduce the FCS observation volume. This, in turn, allows FCS to be applied to solutions with significantly higher fluorophore concentrations. We derive an empirical FCS model accounting for one-dimensional diffusion in a finite tube with a simple exponential observation profile. This technique is used to measure the oligomerization of the bacteriophage lambda repressor protein at micromolar concentrations. The results agree with previous studies utilizing conventional techniques. Additionally, we demonstrate that the zero-mode waveguides can be used to assay biological activity by measuring changes in diffusion constant as a result of ligand binding.

Indexed as

AlgorithmsCrystallizationDimerizationDNA-Binding ProteinsEquipment DesignEquipment Failure AnalysisKineticsMicrochemistryMultiprotein ComplexesRepressor ProteinsSpectrometry, FluorescenceViral ProteinsViral Regulatory and Accessory ProteinsDNA-Binding ProteinsMultiprotein Complexesphage repressor proteinsRepressor ProteinsViral ProteinsViral Regulatory and Accessory Proteins

Identifiers

PMID15613638
PMCPMC1305266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.