Evidence map›Paper›PMID 15613340›Full record

ArticleJournal of virology2005

Genomic variation of the fibropapilloma-associated marine turtle herpesvirus across seven geographic areas and three host species.

Rebecca J Greenblatt, Sandra L Quackenbush, Rufina N Casey, Joel Rovnak, George H Balazs, Thierry M Work, James W Casey, Claudia A Sutton

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Herpesviruses in Reptiles.Frontiers in veterinary science · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. The Risk of Polychlorinated Biphenyls Facilitating Tumors in Hawaiian Green Sea Turtles (International journal of environmental research and public health · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Viruses in reptiles.Veterinary research · 2011
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Rebecca J GreenblattC5-142 Veterinary Medical Center, Cornell University, Ithaca, NY 13045, USA.
Sandra L Quackenbush
Rufina N Casey
Joel Rovnak
George H Balazs
Thierry M Work
James W Casey
Claudia A Sutton
Colorado State University · USCornell University · USNOAA National Marine Fisheries Service · USNOAA National Marine Fisheries Service Pacific Islands Fisheries Science Center · USUnited States Geological Survey · US

Funding

ENVIRONMENTAL TOXICOLOGYT32ES007052 · NIEHS · CORNELL UNIVERSITY ITHACA · PI YEN, ANDREW · 1985 to 2009
$1.4M
NIEHS NIH HHS 2T32 ES07052-26NIEHS NIH HHS T32 ES007052
6 · The paper itself

Abstract

Fibropapillomatosis (FP) of marine turtles is an emerging neoplastic disease associated with infection by a novel turtle herpesvirus, fibropapilloma-associated turtle herpesvirus (FPTHV). This report presents 23 kb of the genome of an FPTHV infecting a Hawaiian green turtle (Chelonia mydas). By sequence homology, the open reading frames in this contig correspond to herpes simplex virus genes UL23 through UL36. The order, orientation, and homology of these putative genes indicate that FPTHV is a member of the Alphaherpesvirinae. The UL27-, UL30-, and UL34-homologous open reading frames from FPTHVs infecting nine FP-affected marine turtles from seven geographic areas and three turtle species (C. mydas, Caretta caretta, and Lepidochelys olivacea) were compared. A high degree of nucleotide sequence conservation was found among these virus variants. However, geographic variations were also found: the FPTHVs examined here form four groups, corresponding to the Atlantic Ocean, West pacific, mid-Pacific, and east Pacific. Our results indicate that FPTHV was established in marine turtle populations prior to the emergence of FP as it is currently known.

Indexed as

Amino Acid SequenceAnimalsBase SequenceFibromaGenetic VariationHerpesviridaeMolecular Sequence DataPapillomaPhylogenyTurtles

Identifiers

PMID15613340
PMCPMC538570
OpenAlexW2166115841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.