ArticlePlant molecular biology2004
The diversity of retroelements in diploid and allotetraploid Brassica species.
Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 44 citations in OpenAlex.
- The Genomic Shock Hypothesis: Genetic and Epigenetic Alterations of Transposable Elements after Interspecific Hybridization in Plants.Epigenomes · 2023Review
- An Eruption of LTR Retrotransposons in the Autopolyploid Genomes ofPlants (Basel, Switzerland) · 2022Article
- Article
- Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species.BMC genomics · 2018Article
- The landscape and structural diversity of LTR retrotransposons in Musa genome.Molecular genetics and genomics : MGG · 2017Article
- Genetic and Epigenetic Changes in Oilseed Rape (Brassica napus L.) Extracted from Intergeneric Allopolyploid and Additions with Orychophragmus.Frontiers in plant science · 2016Article
- Article
- The diversification and activity of hAT transposons in Musa genomes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Article
- Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A-B genome divergence.Molecular genetics and genomics : MGG · 2012Article
- BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space.Plant molecular biology · 2011Article
- iPBS: a universal method for DNA fingerprinting and retrotransposon isolation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Diversity and evolution of Ty1-copia retroelements in representative tribes of Bambusoideae subfamily.Genetica · 2010Article
- The identification of candidate genes associated with Pch2 eyespot resistance in wheat using cDNA-AFLP.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Comparative sequence analysis for Brassica oleracea with similar sequences in B. rapa and Arabidopsis thaliana.Plant cell reports · 2009Article
- Article
- Diversity of LTR-retrotransposons and Enhancer/Suppressor Mutator-like transposons in cassava (Manihot esculenta Crantz).Molecular genetics and genomics : MGG · 2008Article
- Repetitive sequence-derived markers tag centromeres and telomeres and provide insights into chromosome evolution in Brassica napus.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008Article
- Cytogenetics and genome analysis in Brassica crops.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2007Review
- The genomic organization of retrotransposons in Brassica oleracea.Plant molecular biology · 2005Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Using universal PCR primers, some 80 fragments of retroelement reverse transcriptase genes were isolated from 16 accessions of the three diploid and three derived allotetraploid species of Brassica in the triangle of U. Sequence analysis showed that the Ty1/copia and LINE-like elements were distinct, while a third clade could be sub-divided into Ty3/gypsy, Athila and virus-like branches, providing evidence that there are multiple sub-lineages within this group normally considered to be gypsy-like elements in plants. The parsimony trees showed no branches correlating with the known genome relationships for the six diploid and allotetraploid Brassica species, probably because members of the element families were present in the common ancestor of the Brassica and, unlike other repetitive sequences, there is no evidence for genome-wide homogenization, although convergent evolution or horizontal transfer cannot be ruled out. Southern hybridization suggested some sub-families were amplified in individual species. The data show that retroelement sequence data do not allow inference of phylogeny, but knowledge of evolution of such abundant sequences assists in exploitation and interpretation of data from other species including models with much smaller genomes and may provide markers.
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