ArticleNucleic acids research2005
The Rat Genome Database (RGD): developments towards a phenome database.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed.
- Article
- Genome-to-phenome research in rats: progress and perspectives.International journal of biological sciences · 2021Review
- The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.Nucleic acids research · 2020Article
- Does age matter? The impact of rodent age on study outcomes.Laboratory animals · 2017Article
- Identification of a nutrient-sensing transcriptional network in monocytes by using inbred rat models on a cafeteria diet.Disease models & mechanisms · 2016Article
- PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.BMC bioinformatics · 2016Article
- Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens.Nucleic acids research · 2012Article
- Selection of extreme phenotypes: the role of clinical observation in translational research.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2010Review
- Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.Bioinformation · 2009Article
- Detailed transcriptome atlas of the pancreatic beta cell.BMC medical genomics · 2009Article
- The Rat Genome Database 2009: variation, ontologies and pathways.Nucleic acids research · 2009Article
- Advanced genomic data mining.PLoS computational biology · 2008Article
- Article
- Multiplex microsatellite marker panels for genetic monitoring of common rat strains.Journal of the American Association for Laboratory Animal Science : JAALAS · 2008Article
- T1DBase: integration and presentation of complex data for type 1 diabetes research.Nucleic acids research · 2007Article
- Organelle DB: an updated resource of eukaryotic protein localization and function.Nucleic acids research · 2007Article
- The mouse Gene Expression Database (GXD): 2007 update.Nucleic acids research · 2007Article
- Computational approaches to phenotyping: high-throughput phenomics.Proceedings of the American Thoracic Society · 2007Review
- An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits.PLoS computational biology · 2006Article
- methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.BMC bioinformatics · 2006Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
28 authors.
Funding
Abstract
The Rat Genome Database (RGD) (http://rgd.mcw.edu) aims to meet the needs of its community by providing genetic and genomic infrastructure while also annotating the strengths of rat research: biochemistry, nutrition, pharmacology and physiology. Here, we report on RGD's development towards creating a phenome database. Recent developments can be categorized into three groups. (i) Improved data collection and integration to match increased volume and biological scope of research. (ii) Knowledge representation augmented by the implementation of a new ontology and annotation system. (iii) The addition of quantitative trait loci data, from rat, mouse and human to our advanced comparative genomics tools, as well as the creation of new, and enhancement of existing, tools to enable users to efficiently browse and survey research data. The emphasis is on helping researchers find genes responsible for disease through the use of rat models. These improvements, combined with the genomic sequence of the rat, have led to a successful year at RGD with over two million page accesses that represent an over 4-fold increase in a year. Future plans call for increased annotation of biological information on the rat elucidated through its use as a model for human pathobiology. The continued development of toolsets will facilitate integration of these data into the context of rat genomic sequence, as well as allow comparisons of biological and genomic data with the human genomic sequence and of an increasing number of organisms.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.