ArticleNucleic acids research2005
The Vertebrate Genome Annotation (Vega) database.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
90 citing papers in PubMed, 139 citations in OpenAlex.
- Genetic signatures of exceptional longevity: a comprehensive analysis of coding region single nucleotide polymorphisms (SNPs) in centenarians and supercentenarians.Human genomics · 2025Article
- Microbiome-associated human genetic variants impact phenome-wide disease risk.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Single-cell gene fusion detection by scFusion.Nature communications · 2022Article
- SISTEMA: A large and standardized collection of transcriptome data sets for human pluripotent stem cell research.iScience · 2021Article
- Exploration of databases and methods supporting drug repurposing: a comprehensive survey.Briefings in bioinformatics · 2021Review
- Beyond sequencing: re-visiting annotations for PJL as a test case.BMC research notes · 2019Article
- Risk gene-set and pathways in 22q11.2 deletion-related schizophrenia: a genealogical molecular approach.Translational psychiatry · 2019Article
- Article
- Arena-Idb: a platform to build human non-coding RNA interaction networks.BMC bioinformatics · 2018Article
- A major isoform of the E3 ubiquitin ligase March-I in antigen-presenting cells has regulatory sequences within its gene.The Journal of biological chemistry · 2018Article
- Protein-Coding Genes' Retrocopies and Their Functions.Viruses · 2017Review
- Article
- "Reverse Genomics" Predicts Function of Human Conserved Noncoding Elements.Molecular biology and evolution · 2016Article
- Long-term neural and physiological phenotyping of a single human.Nature communications · 2015Article
- Convergent evolution of the genomes of marine mammals.Nature genetics · 2015Article
- Comprehensive comparative homeobox gene annotation in human and mouse.Database : the journal of biological databases and curation · 2015Article
- An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014Article
- Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment.BMC bioinformatics · 2014Article
- Advances in genomics of bony fish.Briefings in functional genomics · 2014Review
- The Vertebrate Genome Annotation browser 10 years on.Nucleic acids research · 2014Article
30 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Vertebrate Genome Annotation (Vega) database (http://vega.sanger.ac.uk) has been designed to be a community resource for browsing manual annotation of finished sequences from a variety of vertebrate genomes. Its core database is based on an Ensembl-style schema, extended to incorporate curation-specific metadata. In collaboration with the genome sequencing centres, Vega attempts to present consistent high-quality annotation of the published human chromosome sequences. In addition, it is also possible to view various finished regions from other vertebrates, including mouse and zebrafish. Vega displays only manually annotated gene structures built using transcriptional evidence, which can be examined in the browser. Attempts have been made to standardize the annotation procedure across each vertebrate genome, which should aid comparative analysis of orthologues across the different finished regions.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.