ArticleNucleic acids research2005
SilkDB: a knowledgebase for silkworm biology and genomics.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.
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Who cites it
82 citing papers in PubMed.
- Review
- Insufficient wing development possibly contributes to flightlessness of the silkwormProceedings. Biological sciences · 2025Article
- DNA methylation-mediated expression of zinc finger protein 615 affects embryonic development inZoological research · 2022Article
- The Role of Filippi's Glands in the Silk Moths Cocoon Construction.International journal of molecular sciences · 2021Article
- High-QualityFrontiers in genetics · 2021Article
- Recessive Z-linked lethals and the retention of haplotype diversity in a captive butterfly population.Heredity · 2020Article
- SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm.Nucleic acids research · 2020Article
- Article
- Global invasion history of the agricultural pest butterflyProceedings of the National Academy of Sciences of the United States of America · 2019Article
- SGID: a comprehensive and interactive database of the silkworm.Database : the journal of biological databases and curation · 2019Article
- Gene Expression Pattern and Regulatory Network ofInternational journal of genomics · 2019Article
- BNGR-A25L and -A27 are two functional G protein-coupled receptors for CAPA periviscerokinin neuropeptides in the silkwormThe Journal of biological chemistry · 2017Article
- Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome.Molecular biology and evolution · 2017Article
- Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study.BMC genomics · 2017Article
- Characterization and expression profiling of serine protease inhibitors in the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae).BMC genomics · 2017Article
- Article
- Comparative transcriptomes analysis of the wing disc between two silkworm strains with different size of wings.PloS one · 2017Article
- SilkPathDB: a comprehensive resource for the study of silkworm pathogens.Database : the journal of biological databases and curation · 2017Article
- Genome-wide identification and analysis of JHBP-domain family members in the silkworm Bombyx mori.Molecular genetics and genomics : MGG · 2016Article
- A multi-objective optimization approach accurately resolves protein domain architectures.Bioinformatics (Oxford, England) · 2016Article
22 more citing papers are in PubMed but not listed here.
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21 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. With the recent accomplishment of a approximately 6X draft genome sequence of the domestic silkworm (Bombyx mori), SilkDB provides an integrated representation of the large-scale, genome-wide sequence assembly, cDNAs, clusters of expressed sequence tags (ESTs), transposable elements (TEs), mutants, single nucleotide polymorphisms (SNPs) and functional annotations of genes with assignments to InterPro domains and Gene Ontology (GO) terms. SilkDB also hosts a set of ESTs from Bombyx mandarina, a wild progenitor of B.mori, and a collection of genes from other Lepidoptera. Comparative analysis results between the domestic and wild silkworm, between B.mori and other Lepidoptera, and between B.mori and the two sequenced insects, fruitfly and mosquito, are displayed by using B.mori genome sequence as a reference framework. Designed as a basic platform, SilkDB strives to provide a comprehensive knowledgebase about the silkworm and present the silkworm genome and related information in systematic and graphical ways for the convenience of in-depth comparative studies. SilkDB is publicly accessible at http://silkworm.genomics.org.cn.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.