ArticleNucleic acids research2005
The SYSTERS Protein Family Database in 2005.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 45 citations in OpenAlex.
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- Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization.Omics : a journal of integrative biology · 2015Article
- Structure-based functional annotation of putative conserved proteins having lyase activity from Haemophilus influenzae.3 Biotech · 2015Article
- Expression and mutational analysis of DinB-like protein DR0053 in Deinococcus radiodurans.PloS one · 2015Article
- Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20.PloS one · 2013Article
- Meta-analysis of general bacterial subclades in whole-genome phylogenies using tree topology profiling.Evolutionary bioinformatics online · 2012Article
- Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family information.BMC genomics · 2011Article
- Ortholog identification in the presence of domain architecture rearrangement.Briefings in bioinformatics · 2011Review
- Ultra-fast sequence clustering from similarity networks with SiLiX.BMC bioinformatics · 2011Article
- CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge.Nucleic acids research · 2011Article
- Genome-wide comparative gene family classification.PloS one · 2010Article
- Rodent and nonrodent malaria parasites differ in their phospholipid metabolic pathways.Journal of lipid research · 2010Article
- Exploration of uncharted regions of the protein universe.PLoS biology · 2009Article
- Article
- TreeFam: 2008 Update.Nucleic acids research · 2008Article
- Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment.BMC bioinformatics · 2007Article
- Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.Nucleic acids research · 2006Article
- TreeFam: a curated database of phylogenetic trees of animal gene families.Nucleic acids research · 2006Article
- JACOP: a simple and robust method for the automated classification of protein sequences with modular architecture.BMC bioinformatics · 2005Article
- Large scale hierarchical clustering of protein sequences.BMC bioinformatics · 2005Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The SYSTERS project aims to provide a meaningful partitioning of the whole protein sequence space by a fully automatic procedure. A refined two-step algorithm assigns each protein to a family and a superfamily. The sequence data underlying SYSTERS release 4 now comprise several protein sequence databases derived from completely sequenced genomes (ENSEMBL, TAIR, SGD and GeneDB), in addition to the comprehensive Swiss-Prot/TrEMBL databases. The SYSTERS web server (http://systers.molgen.mpg.de) provides access to 158 153 SYSTERS protein families. To augment the automatically derived results, information from external databases like Pfam and Gene Ontology are added to the web server. Furthermore, users can retrieve pre-processed analyses of families like multiple alignments and phylogenetic trees. New query options comprise a batch retrieval tool for functional inference about families based on automatic keyword extraction from sequence annotations. A new access point, PhyloMatrix, allows the retrieval of phylogenetic profiles of SYSTERS families across organisms with completely sequenced genomes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.