ArticleNucleic acids research2005
RNAdb--a comprehensive mammalian noncoding RNA database.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.
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Who cites it
73 citing papers in PubMed.
- Non-coding RNAs in human health and disease: potential function as biomarkers and therapeutic targets.Functional & integrative genomics · 2023Review
- Mapping miRNA Research in Schizophrenia: A Scientometric Review.International journal of molecular sciences · 2022Review
- Expression of Extracellular Vesicle PIWI-Interacting RNAs Throughout hiPSC-Cardiomyocyte Differentiation.Frontiers in physiology · 2022Article
- Y chromosomal noncoding RNAs regulate autosomal gene expression via piRNAs in mouse testis.BMC biology · 2021Article
- Overexpression of a Long Non-Coding RNA BC037916 is Associated with Pancreatic Tumorigenesis and Poor Prognosis.OncoTargets and therapy · 2020Article
- Identification of novel long non-coding RNA in diffuse intrinsic pontine gliomas by expression profile analysis.Oncology letters · 2018Article
- Investigation of Long Non-coding RNA Expression Profiles in the Substantia Nigra of Parkinson's Disease.Cellular and molecular neurobiology · 2017Article
- Panel of seven long noncoding RNA as a candidate prognostic biomarker for ovarian cancer.OncoTargets and therapy · 2017Article
- Transcriptomic analysis of maternally provisioned cues for phenotypic plasticity in the annual killifish,EvoDevo · 2017Article
- Review
- Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination.BioMed research international · 2016Review
- Mining, Validation, and Clinical Significance of Colorectal Cancer (CRC)-Associated lncRNAs.PloS one · 2016Article
- A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification.PloS one · 2016Article
- Identification of candidate long noncoding RNAs associated with left ventricular hypertrophy.Clinical and translational science · 2015Article
- A four-long non-coding RNA signature in predicting breast cancer survival.Journal of experimental & clinical cancer research : CR · 2014Article
- piRNAQuest: searching the piRNAome for silencers.BMC genomics · 2014Article
- A long non-coding RNA signature to improve prognosis prediction of colorectal cancer.Oncotarget · 2014Article
- Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs.Frontiers in genetics · 2014Article
- Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.PloS one · 2014Article
- Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements.Genome research · 2014Article
13 more citing papers are in PubMed but not listed here.
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Authors and funding
9 authors.
Funding
Abstract
In recent years, there have been increasing numbers of transcripts identified that do not encode proteins, many of which are developmentally regulated and appear to have regulatory functions. Here, we describe the construction of a comprehensive mammalian noncoding RNA database (RNAdb) which contains over 800 unique experimentally studied non-coding RNAs (ncRNAs), including many associated with diseases and/or developmental processes. The database is available at http://research.imb.uq.edu.au/RNAdb and is searchable by many criteria. It includes microRNAs and snoRNAs, but not infrastructural RNAs, such as rRNAs and tRNAs, which are catalogued elsewhere. The database also includes over 1100 putative antisense ncRNAs and almost 20,000 putative ncRNAs identified in high-quality murine and human cDNA libraries, with more to be added in the near future. Many of these RNAs are large, and many are spliced, some alternatively. The database will be useful as a foundation for the emerging field of RNomics and the characterization of the roles of ncRNAs in mammalian gene expression and regulation.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.