Evidence map›Paper›PMID 15604742›Full record

ArticlePlant molecular biology2004

MYB transcription factors are differentially expressed and regulated during secondary vascular tissue development in hybrid aspen.

Barbara Karpinska, Marlene Karlsson, Manoj Srivastava, Anneli Stenberg, Jarmo Schrader, Fredrik Sterky, Rishikesh Bhalerao, Gunnar Wingsle

Abstract read
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In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 138 citations in OpenAlex.

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  20. Superoxide dismutase--mentor of abiotic stress tolerance in crop plants.Environmental science and pollution research international · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Barbara KarpinskaDepartment of Botany, Stockholm University, Lilla Frescativ. 5, Stockholm, SE-10691, Sweden.
Marlene Karlsson
Manoj Srivastava
Anneli Stenberg
Jarmo Schrader
Fredrik Sterky
Rishikesh Bhalerao
Gunnar Wingsle
Umeå Plant Science Centre · SEKTH Royal Institute of Technology · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

More than 120,000 poplar ESTs have been sequenced from 20 different cDNA libraries by the Swedish Centre for Tree Functional Genomics. We screened this EST collection for MYB transcription factors involved in secondary vascular tissue formation, and genes assigned as PttMYB3Ra, PttMYB4a and PttMYB21a were selected for further characterisation. Three MYB genes showed different expression patterns in various organs, tissues and stem sub-sections representing different developmental stages of vascular tissue formation. Furthermore, the analysis showed that PttMYB21a expression was much higher in secondary cell wall formation zone of xylem and phloem fibers than in other developmental zones. Transgenic hybrid aspen plants, expressing the 3'-part of the PttMYB21a gene in antisense orientation were generated to assess the function of PttMYB21a gene in vascular tissue formation and lignification. All transgenic lines showed reduced growth and had fewer internodes compared to the wild-type. The analysis of selected lines showed that acid soluble lignin present in the bark was higher in transgenic lines as compared to wild-type plants. Moreover a higher transcript level of caffeoyl-CoA 3-O-methyltransferase [CCoAOMT]; EC 2.1.1.104) was found in the phloem of the transgenic plants, suggesting that PttMYB21a might function as a transcriptional repressor.

Indexed as

Gene Expression ProfilingAmino Acid SequenceArabidopsis ProteinsCarbohydrate MetabolismDNA, AntisenseGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantHybridization, GeneticLigninMolecular Sequence DataPhylogenyPlant Growth RegulatorsPlant ProteinsPlants, Genetically ModifiedPlant StructuresPopulusArabidopsis ProteinsATR1 protein, ArabidopsisCPC protein, ArabidopsisDNA, AntisenseLigninPlant Growth RegulatorsPlant ProteinsProtein IsoformsProto-Oncogene Proteins c-mybRNA, PlantSucroseTranscription Factors

Identifiers

PMID15604742
OpenAlexW2091142793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.