Evidence map›Paper›PMID 15604728›Full record

ArticlePlant molecular biology2004

Plant class B HSFs inhibit transcription and exhibit affinity for TFIIB and TBP.

Eva Czarnecka-Verner, Songqin Pan, Tarek Salem, William B Gurley

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 116 citations in OpenAlex.

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  11. Genome-Wide Characterization and Expression of theInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. The impact of heat stress in plant reproduction.Frontiers in plant science · 2023
    Review
  14. Article
  15. A Heat Shock Transcription FactorInternational journal of molecular sciences · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Eva Czarnecka-VernerMicrobiology and Cell Science Department, Program of Plant Molecular and Cellular Biology, University of Florida, Bldg. 981, Gainesville, FL 32611-0700, USA. evaczar@ufl.edu
Songqin Pan
Tarek Salem
William B Gurley
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant heat shock transcription factors (HSFs) are capable of transcriptional activation (class A HSFs) or both, activation and repression (class B HSFs). However, the details of mechanism still remain unclear. It is likely, that the regulation occurs through interactions of HSFs with general transcription factors (GTFs), as has been described for numerous other transcription factors. Here, we show that class A HSFs may activate transcription through direct contacts with TATA-binding protein (TBP). Class A HSFs can also interact weakly with TFIIB. Conversely, class B HSFs inhibit promoter activity through an active mechanism of repression that involves the C-terminal regulatory region (CTR) of class B HSFs. Deletion analysis revealed two sites in the CTR of soybean GmHSFB1 potentially involved in protein-protein interactions with GTFs: one is the repressor domain (RD) located in the N-terminal half of the CTR, and the other is a TFIIB binding domain (BD) that shows affinity for TFIIB and is located C-terminally from the RD. A Gal4 DNA binding domain-RD fusion repressed activity of LexA-activators, while Gal4-BD proteins synergistically activated strong and weak transcriptional activators. In vitro binding studies were consistent with this pattern of activity since the BD region alone interacted strongly with TFIIB, and the presence of RD had an inhibitory effect on TFIIB binding and transcriptional activation.

Indexed as

Amino Acid SequenceArabidopsisBinding, CompetitiveBinding SitesDNA-Binding ProteinsGene Expression Regulation, PlantGlucuronidaseGlutathione TransferaseHeat-Shock ProteinsHeat Shock Transcription FactorsMolecular Sequence DataNicotianaPlant ProteinsProtein BindingProtoplastsRecombinant Fusion ProteinsDNA-Binding ProteinsGlucuronidaseGlutathione TransferaseHeat-Shock ProteinsHeat Shock Transcription FactorsPlant ProteinsRecombinant Fusion ProteinsTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIB

Identifiers

PMID15604728
OpenAlexW2076248048

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.