Evidence map›Paper›PMID 15604724›Full record

ArticlePlant molecular biology2004

Characterization of an unusual Ds transposable element in Arabidopsis thaliana: insertion of an abortive circular transposition intermediate.

Xiaohui Yang, Hong Ma, Christopher A Makaroff

Abstract read
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In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Isolation and Characterization ofFrontiers in plant science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Xiaohui YangThe Department of Chemistry and Biochemistry, Miami University, Oxford, OH 45056, USA.
Hong Ma
Christopher A Makaroff

Funding

Control of Meiotic Homolog Segregation in ArabidopsisR01GM063871 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI MA, HONG · 2001 to 2004
$945k
NIGMS NIH HHS R01 GM55956-02NIGMS NIH HHS R01 GM63871-01
6 · The paper itself

Abstract

The maize Ac/Ds transposable elements, which belong to the hAT transposon superfamily, are widely used as insertional mutagens in numerous plant species. Molecular studies suggest that Ac/Ds elements transpose in a conservative non-replicative fashion; however the molecular mechanism of transposition remains unclear. We describe here the identification of an unusual Ds element, Ds-mmd1 , in a transgenic Arabidopsis line. Ds-mmd1 is rearranged relative to the original Ds element, such that the original 5' and 3' ends are internal and previously internal sequences are the new 5' and 3' termini of Ds-mmd1 . Short duplications of plant genomic DNA and Ds sequences are present at the Ds-mmd1 junctions, suggesting that a circular Ds molecule was part of the events that created the Ds-mmd1 element. In addition, a revertant analysis on mmd1 plants demonstrated that Ds-mmd1 can be eliminated from the genome in an Ac -dependent process.

Indexed as

ArabidopsisBase SequenceBinding SitesBlotting, SouthernDNA, CircularDNA, PlantDNA Transposable ElementsFertilityHomozygoteMeiosisModels, GeneticMutagenesis, InsertionalMutationPlants, Genetically ModifiedDNA, CircularDNA, PlantDNA Transposable Elements

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.