ArticlePlant molecular biology2004
Identification of genes preferentially expressed during wood formation in Eucalyptus.
Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 119 citations in OpenAlex.
- Transcriptomic Evidence Reveals Low Gelatinous Layer Biosynthesis inInternational journal of molecular sciences · 2022Article
- Overexpression ofInternational journal of molecular sciences · 2022Article
- Development, characterization, functional annotation and validation of genomic and genic-SSR markers using de novo next generation sequencing in3 Biotech · 2021Article
- Wood transcriptome analysis and expression variation of lignin biosynthetic pathway transcripts inJournal of biosciences · 2021Article
- Comparative Analyses of Full-Length Transcriptomes RevealFrontiers in genetics · 2021Article
- EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species.Database : the journal of biological databases and curation · 2017Article
- Construction of co-expression network based on natural expression variation of xylogenesis-related transcripts in Eucalyptus tereticornis.Molecular biology reports · 2016Article
- Transcriptomic Analysis of Multipurpose Timber Yielding Tree Neolamarckia cadamba during Xylogenesis Using RNA-Seq.PloS one · 2016Article
- RNA-Seq using two populations reveals genes and alleles controlling wood traits and growth in Eucalyptus nitens.PloS one · 2014Article
- Open access to tree genomes: the path to a better forest.Genome biology · 2013Article
- Xylem transcription profiles indicate potential metabolic responses for economically relevant characteristics of Eucalyptus species.BMC genomics · 2013Article
- Molecular interactions between the olive and the fruit fly Bactrocera oleae.BMC plant biology · 2012Article
- Natural hypolignification is associated with extensive oligolignol accumulation in flax stems.Plant physiology · 2012Article
- Transcriptional changes related to secondary wall formation in xylem of transgenic lines of tobacco altered for lignin or xylan content which show improved saccharification.Phytochemistry · 2012Article
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- Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus.BMC genomics · 2011Article
- Association genetics of wood physical traits in the conifer white spruce and relationships with gene expression.Genetics · 2011Article
- High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species.BMC plant biology · 2011Article
- Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.BMC genomics · 2011Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Wood is the most abundant biological resource on earth and it is also an important raw material for a major global industry with rapidly increasing demand. The genus Eucalyptus includes the most widely used tree species for industrial plantation, mainly for making pulp and paper. With the aim of identifying major genes involved in wood formation in Eucalyptus , we have developed a targeted approach of functional genomics based on the isolation of xylem preferentially expressed genes by subtractive PCR. Transcript profiling using cDNA arrays and analysis of variance (ANOVA) were used to identify differentially expressed ESTs between secondary xylem and leaves. Real-time RT-PCR was performed to confirm the differential expression of representative EST. Of 224 independent EST sequences obtained, 81% were preferentially expressed in xylem. One-third of the ESTs exhibiting homologies with proteins of known function fell into two main classes highlighting the importance of the auxin signalling through ubiquitin-dependent proteolysis on one hand, and of the enzymes involved in cell wall biosynthesis and remodelling, on the other. The functions of the genes represented by the remaining 61% of ESTs should be of great interest for future research. This systematic analysis of genes involved in wood formation in Eucalyptus provides valuable insights into the molecular mechanisms involved in secondary xylem differentiation as well as new candidate-genes for wood quality improvement.
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