Evidence map›Paper›PMID 15604675›Full record

ArticlePlant molecular biology2004

Gamma carbonic anhydrases in plant mitochondria.

Gustavo Parisi, Mariano Perales, María Silvina Fornasari, Alejandro Colaneri, Nahuel González-Schain, Diego Gómez-Casati, Sabrina Zimmermann, Axel Brennicke, Alejandro Araya, James G Ferry and 2 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
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  5. α-CAs from Photosynthetic Organisms.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Gustavo ParisiCentro de Estudios de Investigaciones, Universidad Nacional de Quilmes, Roque Sáenz Peña 180, Bernal, Argentina.
Mariano Perales
María Silvina Fornasari
Alejandro Colaneri
Nahuel González-Schain
Diego Gómez-Casati
Sabrina Zimmermann
Axel Brennicke
Alejandro Araya
James G Ferry
Julián Echave
Eduardo Zabaleta
National University of Quilmes · ARInstituto Tecnológico de Chascomús · ARNational University of General San Martín · ARPennsylvania State University · USUniversität Ulm · DEUniversité de Bordeaux · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Three genes from Arabidopsis thaliana with high sequence similarity to gamma carbonic anhydrase (gammaCA), a Zn containing enzyme from Methanosarcina thermophila (CAM), were identified and characterized. Evolutionary and structural analyses predict that these genes code for active forms of gammaCA. Phylogenetic analyses reveal that these Arabidopsis gene products cluster together with CAM and related sequences from alpha and gamma proteobacteria, organisms proposed as the mitochondrial endosymbiont ancestor. Indeed, in vitro and in vivo experiments indicate that these gene products are transported into the mitochondria as occurs with several mitochondrial protein genes transferred, during evolution, from the endosymbiotic bacteria to the host genome. Moreover, putative CAM orthologous genes are detected in other plants and green algae and were predicted to be imported to mitochondria. Structural modeling and sequence analysis performed in more than a hundred homologous sequences show a high conservation of functionally important active site residues. Thus, the three histidine residues involved in Zn coordination (His 81, 117 and 122), Arg 59, Asp 61, Gin 75, and Asp 76 of CAM are conserved and properly arranged in the active site cavity of the models. Two other functionally important residues (Glu 62 and Glu 84 of CAM) are lacking, but alternative amino acids that might serve to their roles are postulated. Accordingly, we propose that photosynthetic eukaryotic organisms (green algae and plants) contain gammaCAs and that these enzymes codified by nuclear genes are imported into mitochondria to accomplish their biological function.

Indexed as

PhylogenyAmino Acid SequenceArabidopsisArabidopsis ProteinsArchaeal ProteinsBinding SitesCarbonic AnhydrasesGreen Fluorescent ProteinsIsoenzymesMethanosarcinaMicroscopy, ConfocalMitochondriaMitochondrial ProteinsModels, MolecularMolecular Sequence DataPlant ProteinsArabidopsis ProteinsArchaeal ProteinsCarbonic AnhydrasesGreen Fluorescent ProteinsIsoenzymesMitochondrial ProteinsPlant ProteinsRecombinant Fusion Proteins

Identifiers

PMID15604675
OpenAlexW1998959084

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.