Evidence map›Paper›PMID 15604142›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae.

David J Galgoczy, Ann Cassidy-Stone, Manuel Llinás, Sean M O'Rourke, Ira Herskowitz, Joseph L DeRisi, Alexander D Johnson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Genetic and environmental control of parasexual reproduction in the pathogenicMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  3. Multiple aspects of amyloid dynamicsFrontiers in molecular neuroscience · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. TheFrontiers in fungal biology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Saline stress affects the pH-dependent regulation of the transcription factor PacC in the dermatophyte Trichophyton interdigitale.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Sex and the Imperfect Fungi.Microbiology spectrum · 2017
    Review
  18. Review
  19. Article
  20. Gamete signalling underlies the evolution of mating types and their number.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

David J GalgoczyDepartment of Biochemistry and Biophysics, University of California, 600 16th Street, San Francisco, CA 94143-2200, USA.
Ann Cassidy-Stone
Manuel Llinás
Sean M O'Rourke
Ira Herskowitz
Joseph L DeRisi
Alexander D Johnson

Funding

MECHANISMS OF YEAST TRANSCRIPTIONAL REGULATORSR01GM037049 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 1986 to 2024
$9.4M
NIGMS NIH HHS R01 GM037049NIGMS NIH HHS R01 GM37049
6 · The paper itself

Abstract

The budding yeast Saccharomyces cerevisiae has three cell types (a cells, alpha cells, and a/alpha cells), each of which is specified by a unique combination of transcriptional regulators. This transcriptional circuit has served as an important model for understanding basic features of the combinatorial control of transcription and the specification of cell type. Here, using genome-wide chromatin immunoprecipitation, transcriptional profiling, and phylogenetic comparisons, we describe the complete cell-type-specification circuit for S. cerevisiae. We believe this work represents a complete description of cell-type specification in a eukaryote.

Indexed as

Genome, FungalBinding SitesChromatin ImmunoprecipitationEvolution, MolecularGene Expression Regulation, FungalGenes, FungalModels, GeneticOligonucleotide Array Sequence AnalysisOpen Reading FramesOsmosisPhylogenyProtein BindingSaccharomyces cerevisiaeSodium ChlorideTranscription, GeneticSodium Chloride

Identifiers

PMID15604142
PMCPMC535907

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.