Evidence map›Paper›PMID 15601865›Full record

ArticleMolecular and cellular biology2005

Structural and functional analysis of essential pre-mRNA splicing factor Prp19p.

Melanie D Ohi, Craig W Vander Kooi, Joshua A Rosenberg, Liping Ren, Justin P Hirsch, Walter J Chazin, Thomas Walz, Kathleen L Gould

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
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  9. Interaction ofFrontiers in plant science · 2021
    Article
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Prp19 Arrests Cell Cycle via Cdc5L in Hepatocellular Carcinoma Cells.International journal of molecular sciences · 2017
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Melanie D OhiDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN 37232, USA.
Craig W Vander Kooi
Joshua A Rosenberg
Liping Ren
Justin P Hirsch
Walter J Chazin
Thomas Walz
Kathleen L Gould
Vanderbilt University · USHarvard University · USJoint Center for Structural Genomics · USHoward Hughes Medical Institute · US

Funding

Single particle reconstructionP01GM062580 · NIGMS · HARVARD MEDICAL SCHOOL · PI HARRISON, STEPHEN COPLAN · 2001 to 2016
$23.7M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
VIRUSES, NUCLEIC ACIDS, GROWTH, AND CANCERT32CA009385 · NCI · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 1985 to 2007
$4.1M
S100 PROTEINS: STRUCTURAL BASIS OF FUNCTIONAL PROPERTIESR01GM062112 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2000 to 2009
$2.1M
NCI NIH HHS T32 CA009385NCI NIH HHS T32 CA 09385NIGMS NIH HHS P01 GM062580NIGMS NIH HHS R01 GM062112NIGMS NIH HHS R01 GM 62112NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32 GM 08320
6 · The paper itself

Abstract

U-box-containing Prp19p is an integral component of the Prp19p-associated complex (the nineteen complex, or NTC) that is essential for activation of the spliceosome. Prp19p makes numerous protein-protein contacts with other NTC components and is required for NTC stability. Here we show that Prp19p forms a tetramer in vitro and in vivo and we map the domain required for its oligomerization to a central tetrameric coiled-coil. Biochemical and in vivo analyses are consistent with Prp19p tetramerization providing an interaction surface for a single copy of its binding partner, Cef1p. Electron microscopy showed that the isolated Prp19p tetramer is an elongated particle consisting of four globular WD40 domains held together by a central stalk consisting of four N-terminal U-boxes and four coiled-coils. These structural and functional data provide a basis for understanding the role of Prp19p as a key architectural component of the NTC.

Indexed as

Cell Cycle ProteinsChromatography, GelCircular DichroismDimerizationDNA Mutational AnalysisGenotypeImage Processing, Computer-AssistedImmunoblottingImmunoprecipitationMicroscopy, ElectronModels, BiologicalPolymerase Chain ReactionProtein BindingProtein ConformationProtein Structure, TertiaryRecombinant Fusion Proteinscdc5 protein, S pombeCEF1 protein, S cerevisiaeCell Cycle ProteinsPRP19 protein, S cerevisiaeRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, MessengerRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID15601865
PMCPMC538785
OpenAlexW2096993874

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.