Evidence map›Paper›PMID 15599398›Full record

ArticleThe Journal of clinical investigation2004

Natural population dynamics and expansion of pathogenic clones of Staphylococcus aureus.

Damian C Melles, Raymond F J Gorkink, Hélène A M Boelens, Susan V Snijders, Justine K Peeters, Michael J Moorhouse, Peter J van der Spek, Willem B van Leeuwen, Guus Simons, Henri A Verbrugh and 1 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 231 citations in OpenAlex.

  1. Trial
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  8. ST7 Becomes One of the Most CommonInfection and drug resistance · 2023
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  9. Journal of general and family medicine · 2022
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  10. Staphylococcus aureus genotype variation among and within periprosthetic joint infections.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2022
    Article
  11. Article
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  13. Pathogens (Basel, Switzerland) · 2021
    Review
  14. Review
  15. Case reports in pediatrics · 2021
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  16. Reducing transmission of methicillin-resistantInfection prevention in practice · 2019
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  17. Article
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  19. Molecular Epidemiology ofFrontiers in microbiology · 2018
    Article
  20. Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Damian C MellesUniversity Medical Center Rotterdam, Department of Medical Microbiology and Infectious Diseases, Room L-313, Dr Molewaterplein 40, 3015 GD Rotterdam, The Netherlands. d.melles@erasmusmc.nl
Raymond F J Gorkink
Hélène A M Boelens
Susan V Snijders
Justine K Peeters
Michael J Moorhouse
Peter J van der Spek
Willem B van Leeuwen
Guus Simons
Henri A Verbrugh
Alex van Belkum
Erasmus MC · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The population structure of Staphylococcus aureus carried by healthy humans was determined using a large strain collection of nonclinical origin (n = 829). High-throughput amplified fragment length polymorphism (AFLP) analysis revealed 3 major and 2 minor genetic clusters of S. aureus, which were corroborated by multilocus sequence typing. Major AFLP cluster I comprised 44.4% of the carriage isolates and showed additional heterogeneity whereas major AFLP groups II and III presented 2 homogeneous clusters, including 47.3% of all carriage isolates. Coanalysis of invasive S. aureus strains and epidemic methicillin-resistant S. aureus (MRSA) revealed that all major clusters contained invasive and multiresistant isolates. However, clusters and subclusters with overrepresentation of invasive isolates were also identified. Bacteremia in elderly adults, for instance, was caused by a IVa cluster-derived strain significantly more often than by strains from other AFLP clusters. Furthermore, expansion of multiresistant clones or clones associated with skin disease (impetigo) was detected, which suggests that epidemic potential is present in pathogenic strains of S. aureus. In addition, the virulence gene encoding Panton-Valentine leukocidin was significantly enriched in S. aureus strains causing abscesses and arthritis in comparison with the carriage group. We provide evidence that essentially any S. aureus genotype carried by humans can transform into a life-threatening human pathogen but that certain clones are more virulent than others.

Indexed as

Cloning, MolecularCluster AnalysisDNAGenetic TechniquesGenetic VariationGenetic VectorsGenome, BacterialGenotypeHumansMethicillinModels, GeneticMultigene FamilyPolymorphism, GeneticSpecies SpecificityStaphylococcal InfectionsStaphylococcus aureusDNAMethicillin

Identifiers

PMID15599398
PMCPMC535072
OpenAlexW2145051545

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.