Evidence map›Paper›PMID 15598821›Full record

ArticleNucleic acids research2004

Repression of the yeast HO gene by the MATalpha2 and MATa1 homeodomain proteins.

Jonathan R Mathias, Sean E Hanlon, Ruadhan A O'Flanagan, Anirvan M Sengupta, Andrew K Vershon

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Disruption of promoter memory by synthesis of a long noncoding RNA.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Fungal sex and pathogenesis.Clinical microbiology reviews · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathan R MathiasWaksman Institute and Department of Molecular Biology and Biochemistry, 190 Frelinghuysen Road, Rutgers University, Piscataway, NJ 08854-8020, USA.
Sean E Hanlon
Ruadhan A O'Flanagan
Anirvan M Sengupta
Andrew K Vershon
Rutgers, The State University of New Jersey · US

Funding

MOLECULAR INTERACTIONS OF A YEAST HOMEODOMAIN PROTEINR01GM049265 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI VERSHON, ANDREW · 1993 to 2005
$1.7M
NIGMS NIH HHS GM49265NIGMS NIH HHS R01 GM049265
6 · The paper itself

Abstract

The HO gene in Saccharomyces cerevisiae is regulated by a large and complex promoter that is similar to promoters in higher order eukaryotes. Within this promoter are 10 potential binding sites for the a1-alpha2 heterodimer, which represses HO and other haploid-specific genes in diploid yeast cells. We have determined that a1-alpha2 binds to these sites with differing affinity, and that while certain strong-affinity sites are crucial for repression of HO, some of the weak-affinity sites are dispensable. However, these weak-affinity a1-alpha2-binding sites are strongly conserved in related yeast species and have a role in maintaining repression upon the loss of strong-affinity sites. We found that these weak sites are sufficient for a1-alpha2 to partially repress HO and recruit the Tup1-Cyc8 (Tup1-Ssn6) co-repressor complex to the HO promoter. We demonstrate that the Swi5 activator protein is not bound to URS1 in diploid cells, suggesting that recruitment of the Tup1-Cyc8 complex by a1-alpha2 prevents DNA binding by activator proteins resulting in repression of HO.

Indexed as

Gene Expression Regulation, FungalBase SequenceBinding SitesCell CycleChromatin ImmunoprecipitationDeoxyribonucleases, Type II Site-SpecificGene SilencingHomeodomain ProteinsNuclear ProteinsPhylogenyPromoter Regions, GeneticRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDeoxyribonucleases, Type II Site-SpecificHomeodomain ProteinsHO protein, S cerevisiaeMATA1 protein, S cerevisiaeMATA2 protein, S cerevisiaeNuclear ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeTUP1 protein, S cerevisiae

Identifiers

PMID15598821
PMCPMC545453
OpenAlexW2121927896

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.