Evidence map›Paper›PMID 15596839›Full record

ArticleJournal of virology2005

R5 human immunodeficiency virus type 1 infection of fetal thymic organ culture induces cytokine and CCR5 expression.

Shailesh K Choudhary, Neelima R Choudhary, Katherine C Kimbrell, Jonathan Colasanti, Argyrios Ziogas, David Kwa, Hanneke Schuitemaker, David Camerini

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Shailesh K ChoudharyDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, California 92697-3900, USA.
Neelima R Choudhary
Katherine C Kimbrell
Jonathan Colasanti
Argyrios Ziogas
David Kwa
Hanneke Schuitemaker
David Camerini
University of Virginia · USSanquin · NLUniversity of Amsterdam · NLUniversity of California, Irvine · US

Funding

PATHOGENESIS OF R5 HIV-1 ISOLATESR01AI047729 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI CAMERINI, DAVID · 2000 to 2004
$1.5M
HIV-1 Clones with Attenuated Cytopathic EffectsR21AI055385 · NIAID · UNIVERSITY OF CALIFORNIA IRVINE · PI CAMERINI, DAVID · 2003 to 2004
$455k
NIAID NIH HHS R01 AI047729NIAID NIH HHS R01 AI 47729NIAID NIH HHS R21 AI055385NIAID NIH HHS R21 AI 55385
6 · The paper itself

Abstract

Late-stage CCR5 tropic human immunodeficiency virus type 1 (HIV-1) isolates (R5 HIV-1) can deplete nearly all CD4+ thymocytes from human thymus/liver grafts, despite the fact that fewer than 5% of these cells express CCR5. To resolve this paradox, we studied the replication and cytopathic effects (CPE) of late-stage R5 HIV-1 biological clones from two progressors and two long-term nonprogressors (LTNP) in fetal thymic organ culture (FTOC) with and without added cytokines. We found that R5 HIV-1 clones from progressors but not LTNP were cytopathic in untreated FTOC. Moreover, R5 HIV-1 clones from progressors replicated to higher levels than LTNP-derived R5 HIV-1 clones in this system. In contrast, when FTOC was maintained in the presence of interleukin 2 (IL-2), IL-4, and IL-7, both progressor and LTNP clones exhibited similar replication and CPE, which were equal to or greater than the levels achieved by progressor-derived R5 HIV-1 clones in untreated FTOC. This finding was likely due to IL-2-induced CCR5 expression on CD4+ thymocytes in FTOC. R5 HIV-1 clones showed greater pathogenesis for CCR5+ cells but also showed evidence of CPE on CCR5- cells. Furthermore, infection of FTOC by R5 HIV-1 induced IL-10 and transforming growth factor beta (TGF-beta) expression. Both IL-10 and TGF-beta in turn induced CCR5 expression in FTOC. Induction of CCR5 expression via cytokine induction by R5 HIV-1 infection of CCR5+ thymocytes likely permitted further viral replication in newly CCR5+ thymocytes. CCR5 expression, therefore, is a key determinant of pathogenesis of R5 HIV-1 in FTOC.

Indexed as

Gene Expression RegulationCytokinesCytopathogenic Effect, ViralFetusHIV-1HIV InfectionsHIV Long-Term SurvivorsHumansInterleukin-10Organ Culture TechniquesReceptors, CCR5Thymus GlandTransforming Growth Factor betaVirus ReplicationCytokinesInterleukin-10Receptors, CCR5Transforming Growth Factor beta

Identifiers

PMID15596839
PMCPMC538709
OpenAlexW2088465906

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.