Evidence map›Paper›PMID 15596799›Full record

ArticleJournal of virology2005

Focal distribution of baculovirus IE1 triggered by its binding to the hr DNA elements.

Toshihiro Nagamine, Yu Kawasaki, Tetsutaro Iizuka, Shogo Matsumoto

Abstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Toshihiro NagamineLaboratory of Molecular Entomology, RIKEN Discovery Research Institute, Wako-shi, Saitama, Japan. tnaga@postman.riken.go.jp
Yu Kawasaki
Tetsutaro Iizuka
Shogo Matsumoto

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In BmN cells infected with the baculovirus Bombyx mori nucleopolyhedrovirus (BmNPV), IE1, a principal transcriptional activator, localizes to sites of viral DNA replication. IE1 initially displays focal distribution in BmNPV-infected cells prior to DNA synthesis, whereas the protein expressed by transfection with the ie1 gene is distributed throughout the nucleoplasm instead of localized to discrete subnuclear structures. To identify the inducer of focus formation for IE1, we conducted transfection experiments with an IE1-GFP construct and found that cotransfection with genomic DNA fragments bearing the homologous region (hr) sequences caused the formation of IE1-green fluorescent protein (GFP) foci. The transfection of insect cells with a single plasmid containing exclusively the hr3 sequence and the IE1-GFP gene was sufficient to form IE1-GFP foci. These results suggest that hr elements are a primary determinant of the focal distribution of IE1. An analysis of a series of hr3 deletion mutants showed that a single copy of the direct repeat could induce the formation of IE1 foci. Targeted mutagenesis within the hr-binding domain of IE1-GFP caused impairment of the hr-dependent IE1 localization, suggesting that binding of IE1 to the hr elements is essential for the onset of IE1 focus formation. The observation of BmNPV IE1 foci in non-BmNPV-susceptible cells suggests that no species-specific factors are required for hr-dependent IE1 focus formation.

Indexed as

Gene Expression Regulation, ViralAnimalsBombyxCell Nucleus StructuresCells, CulturedDNA-Binding ProteinsDNA ReplicationDNA, ViralGreen Fluorescent ProteinsImmediate-Early ProteinsLepidopteraNucleopolyhedrovirusesRecombinant Fusion ProteinsRepetitive Sequences, Nucleic AcidReplication OriginTrans-ActivatorsAc-IE-1 protein, Autographa californica nucleopolyhedrovirusDNA-Binding ProteinsDNA, ViralGreen Fluorescent ProteinsImmediate-Early ProteinsRecombinant Fusion ProteinsTrans-Activators

Identifiers

PMID15596799
PMCPMC538704

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.