Evidence map›Paper›PMID 15583272›Full record

ArticleJournal of clinical microbiology2004

Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia.

Toïdi Adékambi, Martine Reynaud-Gaubert, Gilbert Greub, Marie-José Gevaudan, Bernard La Scola, Didier Raoult, Michel Drancourt

Expression of concernOpen access · greenAbstract readCase Reports
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 121 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 1 synthesis or guideline pooled it, 286 citations in OpenAlex.

  1. Guideline
  2. Journal of bacteriology · 2026
    Review
  3. From colonisation to chronicity: adaptation ofMicrobiology (Reading, England) · 2026
    Article
  4. Genomic-enabled classification of threeJournal of clinical microbiology · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Short SignatureMicrobiology spectrum · 2022
    Article
  11. Rapid and Accurate Differentiation ofFrontiers in cellular and infection microbiology · 2022
    Article
  12. CutaneousAnnals of dermatology · 2021
    Article
  13. Population Genomics ofAnnals of the American Thoracic Society · 2021
    Article
  14. Article
  15. A New Model of ChronicInternational journal of molecular sciences · 2020
    Article
  16. Review
  17. Identification of Mycobacterium abscessus species and subspecies using the Cas12a/sgRNA-based nucleic acid detection platform.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Article
  18. Article
  19. Microorganisms · 2019
    Review
  20. Article

61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Toïdi AdékambiUnité des Rickettsies, CNRS UMR 6020 IFR 48, Faculté de Médecine, Université de la Méditteranée, Marseille, France.
Martine Reynaud-Gaubert
Gilbert Greub
Marie-José Gevaudan
Bernard La Scola
Didier Raoult
Michel Drancourt
Institut de Neurobiologie de la Méditerranée · FRHôpital Sainte-Marguerite · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A nonphotochromogenic, rapidly growing Mycobacterium strain was isolated in pure culture from the sputum and the bronchoalveolar fluid of a patient with hemoptoic pneumonia by using axenic media and an amoebal coculture system. Both isolates grew in less than 7 days at 24 to 37 degrees C with an optimal growth temperature of 30 degrees C. The isolates exhibited biochemical and antimicrobial susceptibility profiles overlapping those of Mycobacterium abscessus, Mycobacterium chelonae, and Mycobacterium immunogenum, indicating that they belonged to M. chelonae-M. abscessus group. They differed from M. abscessus in beta-galactosidase, beta-N-acetyl-beta-glucosaminidase, and beta-glucuronidase activities and by the lack of nitrate reductase and indole production activities, as well as in their in vitro susceptibilities to minocycline and doxycycline. These isolates and M. abscessus differed from M. chelonae and M. immunogenum by exhibiting gelatinase and tryptophane desaminase activities. Their 16S rRNA genes had complete sequence identity with that of M. abscessus and >99.6% similarity with those of M. chelonae and M. immunogenum. Further molecular investigations showed that partial hsp65 and sodA gene sequences differed from that of M. abscessus by five and three positions over 441 bp, respectively. Partial rpoB and recA gene sequence analyses showed 96 and 98% similarities with M. abscessus, respectively. Similarly, 16S-23S rRNA internal transcribed spacer sequence of the isolates differed from that of M. abscessus by a A-->G substitution at position 60 and a C insertion at position 102. Phenotypic and genotypic features of these two isolates indicated that they were representative of a new mycobacterial species within the M. chelonae-M. abscessus group. Phylogenetic analysis suggested that these isolates were perhaps recently derived from M. abscessus. We propose the name of "Mycobacterium massiliense" for this new species. The type strain has been deposited in the Collection Institut Pasteur as CIP 108297(T) and in Culture Collection of the University of Goteborg, Goteborg, Sweden, as CCUG 48898(T).

Indexed as

AcanthamoebaAnimalsAnti-Bacterial AgentsBacterial ProteinsBase SequenceBronchoalveolar Lavage FluidCoculture TechniquesDNA, RibosomalFemaleHumansMicrobial Sensitivity TestsMiddle AgedMolecular Sequence DataMycobacteriumMycobacterium InfectionsPneumonia, BacterialAnti-Bacterial AgentsBacterial ProteinsDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID15583272
PMCPMC535245
OpenAlexW2114834842

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.