Evidence map›Paper›PMID 15579711›Full record

ArticleGenetics2004

Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.].

Caroline Scotti-Saintagne, Stéphanie Mariette, Ilga Porth, Pablo G Goicoechea, Teresa Barreneche, Catherine Bodénès, Kornel Burg, Antoine Kremer

Abstract read
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
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  7. Multiomics Molecular Research into the Recalcitrant and OrphanInternational journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
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  11. Article
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  13. Review
  14. Assessment of genetic diversity and population structure of an endemic Moroccan tree (Physiology and molecular biology of plants : an international journal of functional plant biology · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Introgression Threatens the Genetic Diversity ofFrontiers in plant science · 2017
    Article
  19. Article
  20. High-density linkage mapping and distribution of segregation distortion regions in the oak genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Caroline Scotti-SaintagneINRA, UMR Biodiversité Gènes et Ecosystèmes, 33612 Cestas Cedex, France.
Stéphanie Mariette
Ilga Porth
Pablo G Goicoechea
Teresa Barreneche
Catherine Bodénès
Kornel Burg
Antoine Kremer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interspecific differentiation values (G(ST)) between two closely related oak species (Quercus petraea and Q. robur) were compiled across different studies with the aim to explore the distribution of differentiation at the genome level. The study was based on a total set of 389 markers (isozymes, AFLPs, SCARs, microsatellites, and SNPs) for which allelic frequencies were estimated in pairs of populations sampled throughout the sympatric distribution of the two species. The overall distribution of G(ST) values followed an L-shaped curve with most markers exhibiting low species differentiation (G(ST) < 0.01) and only a few loci reaching >10% levels. Twelve percent of the loci exhibited significant G(ST) deviations to neutral expectations, suggesting that selection contributed to species divergence. Coding regions expressed higher differentiation than noncoding regions. Among the 389 markers, 158 could be mapped on the 12 linkage groups of the existing Q. robur genetic map. Outlier loci with large G(ST) values were distributed over 9 linkage groups. One cluster of three outlier loci was found within 0.51 cM; but significant autocorrelation of G(ST) was observed at distances <2 cM. The size and distribution of genomic regions involved in species divergence are discussed in reference to hitchhiking effects and disruptive selection.

Indexed as

Genome, PlantCrosses, GeneticGenetic LinkageGenetic MarkersHeterozygoteQuercusGenetic Markers

Identifiers

PMID15579711
PMCPMC1448783

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.