Evidence map›Paper›PMID 15579687›Full record

ArticleGenetics2004

Genetic analysis of the Caenorhabditis elegans pax-6 locus: roles of paired domain-containing and nonpaired domain-containing isoforms.

Hediye Nese Cinar, Andrew D Chisholm

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.3field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. A PAX6-regulated receptor tyrosine kinase pairs with a pseudokinase to activate immune defense upon oomycete recognition inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. AnmicroPublication biology · 2023
    Article
  4. Article
  5. Article
  6. High-speed label-free confocal microscopy ofBiomedical optics express · 2021
    Article
  7. International journal of molecular sciences · 2019
    Article
  8. Review
  9. Phenotypic plasticity and remodeling in the stress-induced Caenorhabditis elegans dauer.Wiley interdisciplinary reviews. Developmental biology · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Hediye Nese CinarSinsheimer Laboratories, Department of Molecular, Cellular and Developmental Biology, University of California, Santa Cruz, California 95064, USA.
Andrew D Chisholm
University of California, Santa Cruz · US

Funding

Mechanisms of Tissue Morphogenesis in C. elegansR01GM054657 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CHISHOLM, ANDREW D · 1997 to 2018
$5.8M
NIGMS NIH HHS R01 GM054657NIGMS NIH HHS R01 GM-54657
6 · The paper itself

Abstract

PAX-6 proteins are involved in eye and brain development in many animals. In the nematode Caenorhabditis elegans the pax-6 locus encodes multiple PAX-6 isoforms both with and without a paired domain. Mutations in the C. elegans pax-6 locus can be grouped into three classes. Mutations that affect paired domain-containing isoforms cause defects in epidermal morphogenesis, epidermal cell fates, and gonad cell migration and define the class I (vab-3) complementation group. The class II mutation mab-18(bx23) affects nonpaired domain-containing isoforms and transforms the fate of a sensory organ in the male tail. Class III mutations affect both paired domain and nonpaired domain isoforms; the most severe class III mutations are candidate null mutations in pax-6. Class III mutant phenotypes do not resemble a simple sum of class I and class II phenotypes. A comparison of class I and class III phenotypes indicates that PAX-6 isoforms can interact additively, synergistically, or antagonistically, depending on the cellular context.

Indexed as

AnimalsCaenorhabditis elegansCell MovementEpidermisExonsEye ProteinsHomeodomain ProteinsMalePaired Box Transcription FactorsPAX6 Transcription FactorProtein IsoformsProtein Structure, TertiaryRepressor ProteinsSequence Analysis, DNAEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPAX6 Transcription FactorProtein IsoformsRepressor Proteins

Identifiers

PMID15579687
PMCPMC1448762
OpenAlexW2131274455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.