Evidence map›Paper›PMID 15579438›Full record

ArticleThe American journal of pathology2004

CTNNB1 mutations and overexpression of Wnt/beta-catenin target genes in WT1-mutant Wilms' tumors.

Chi-Ming Li, Connie E Kim, Adam A Margolin, Meirong Guo, Jimmy Zhu, Jacqueline M Mason, Terrence W Hensle, Vundavalli V V S Murty, Paul E Grundy, Eric R Fearon and 3 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The American journal of pathology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 148 citations in OpenAlex.

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  20. Inferring clonal composition from multiple tumor biopsies.NPJ systems biology and applications · 2020
    Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Chi-Ming LiInstitute of Cancer Genetics, Columbia University College of Physicians and Surgeons, New York, New York, USA.
Connie E Kim
Adam A Margolin
Meirong Guo
Jimmy Zhu
Jacqueline M Mason
Terrence W Hensle
Vundavalli V V S Murty
Paul E Grundy
Eric R Fearon
Vivette D'Agati
Jonathan D Licht
Benjamin Tycko
Cancer Genetics (United States) · USColumbia University · USIcahn School of Medicine at Mount Sinai · USUniversity of Alberta · CAUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gain-of-function mutations in exon 3 of beta-catenin (CTNNB1) are specific for Wilms' tumors that have lost WT1, but 50% of WT1-mutant cases lack such "hot spot" mutations. To ask whether stabilization of beta-catenin might be essential after WT1 loss, and to identify downstream target genes, we compared expression profiles in WT1-mutant versus WT1 wild-type Wilms' tumors. Supervised and nonsupervised hierarchical clustering of the expression data separated these two classes of Wilms' tumor. The WT1-mutant tumors overexpressed genes encoding myogenic and other transcription factors (MOX2, LBX1, SIM2), signaling molecules (TGFB2, FST, BMP2A), extracellular Wnt inhibitors (WIF1, SFRP4), and known beta-catenin/TCF targets (FST, CSPG2, CMYC). Beta-Catenin/TCF target genes were overexpressed in the WT1-mutant tumors even in the absence of CTNNB1 exon 3 mutations, and complete sequencing revealed gain-of-function mutations elsewhere in the CTNNB1 gene in some of these tumors, increasing the overall mutation frequency to 75%. Lastly, we identified and validated a novel direct beta-catenin target gene, GAD1, among the WT1-mutant signature genes. These data highlight two molecular classes of Wilms' tumor, and indicate strong selection for stabilization of beta-catenin in the WT1-mutant class. Beta-Catenin stabilization can initiate tumorigenesis in other systems, and this mechanism is likely critical in tumor formation after loss of WT1.

Indexed as

Gene Expression Regulation, NeoplasticMutationbeta CateninCells, CulturedCytoskeletal ProteinsGene Expression ProfilingGlutamate DecarboxylaseHumansIsoenzymesKidneyKidney NeoplasmsLuciferasesOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProto-Oncogene ProteinsTrans-Activatorsbeta CateninCTNNB1 protein, humanCytoskeletal ProteinsGlutamate Decarboxylaseglutamate decarboxylase 1IsoenzymesLuciferasesProto-Oncogene ProteinsTrans-ActivatorsWnt ProteinsWT1 Proteins

Identifiers

PMID15579438
PMCPMC1618727
OpenAlexW2089253181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.