Evidence map›Paper›PMID 15576773›Full record

ArticleJournal of bacteriology2004

Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase.

Lynn C Thomason, Donald L Court, Atin R Datta, Rita Khanna, Judah L Rosner

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Metabolic engineering · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Extracellular aldonolactonase from Myceliophthora thermophila.Applied and environmental microbiology · 2011
    Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Lynn C ThomasonGene Regulation and Chromosome Biology Laboratory, Building 539, Room 243, National Cancer Institute-Frederick, Frederick, MD 21702, USA. lthomason@ncifcrf.gov
Donald L Court
Atin R Datta
Rita Khanna
Judah L Rosner
National Institutes of Health · USCenter for Cancer Research · USFrederick National Laboratory for Cancer Research · USNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Nonheritable Antibiotic ResistanceZIADK036003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI ROSNER, JUDAH L · 2009 to 2016
$2.1M
NONHERITABLE ANTIBIOTIC RESISTANCEZ01DK036003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI ROSNER, JUDAH L · 1986 to 2008
$668k
6 · The paper itself

Abstract

We report identification of the Escherichia coli ybhE gene as the pgl gene that encodes 6-phosphogluconolactonase. A tentative identification was first made based on the known approximate location of the pgl gene and the similarity of the presumptive ybhE-encoded protein sequence to a known Pgl enzyme. To test this notion, the ybhE gene was deleted and replaced with a drug marker. Like previously characterized pgl mutants, the ybhE deletion mutant had a Blu- phenotype (dark-blue staining with iodine due to accumulation of starch after growth on minimal maltose) and demonstrated impaired growth on minimal glucose medium when combined with a pgi mutation. Biochemical assay of crude extracts for 6-phosphogluconolactonase enzymatic activity showed that ybhE encodes this activity. The ybhE gene was transferred from the E. coli chromosome to an expression vector. This ybhE clone complemented both the precise deletion of the ybhE gene and a larger deletion, pglDelta8, for the Blu- phenotype and for phosphogluconolactonase activity, confirming that ybhE is the pgl gene. A newly observed phenotype of pgl strains is a lowered frequency of appearance of Bgl+ mutants that can utilize the beta-glucoside salicin. This is likely due to poor growth of Bgl+ pgl strains on salicin due to the accumulation of 6-phosphogluconolactone.

Indexed as

Carboxylic Ester HydrolasesCulture MediaEscherichia coliEscherichia coli ProteinsMutationPhenotypeRecombination, Genetic6-phosphogluconolactonaseCarboxylic Ester HydrolasesCulture MediaEscherichia coli Proteins

Identifiers

PMID15576773
PMCPMC532434
OpenAlexW1986857169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.