Evidence map›Paper›PMID 15576551›Full record

ArticleProtein science : a publication of the Protein Society2005

pH effects on the stability and dimerization of procaspase-3.

Kakoli Bose, A Clay Clark

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Sequential unfolding mechanisms of monomeric caspases.bioRxiv : the preprint server for biology · 2023
    Article
  3. Article
  4. Evolution of the folding landscape of effector caspases.The Journal of biological chemistry · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Death by caspase dimerization.Advances in experimental medicine and biology · 2012
    Review
  9. Design and characterization of an enhanced repressor of human papillomavirus E2 protein.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2011
    Article
  10. Article
  11. Melody, an ENU mutation in Caspase 3, alters the catalytic cysteine residue and causes sensorineural hearing loss in mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2010
    Article
  12. Folding and assembly kinetics of procaspase-3.Protein science : a publication of the Protein Society · 2009
    Article
  13. Article
  14. Reassembly of active caspase-3 is facilitated by the propeptide.The Journal of biological chemistry · 2005
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kakoli BoseDepartment of Molecular and Structural Biochemistry, 128 Polk Hall, North Carolina State University, Raleigh, NC 27695-7622, USA.
A Clay Clark

Funding

Dimerization mechanisms of two procaspase subfamiliesR01GM065970 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI CLARK, ALLAN CLAY · 2003 to 2012
$2.4M
NIGMS NIH HHS GM065970NIGMS NIH HHS R01 GM065970
6 · The paper itself

Abstract

pH-dependent conformational changes are known to occur in dimeric procaspase-3, and they have been shown to affect the rate of automaturation. We studied the equilibrium unfolding of procaspase-3(C163S) as a function of pH (between pH 8.5 and pH 4) in order to examine these changes in the context of folding and stability. The data show that the procaspase dimer undergoes a pH-dependent dissociation below pH 5, so that the protein is mostly monomeric at pH 4. Consistent with this, the dimer unfolds via a four-state process between pH 8.5 and pH 4.75, in which the native dimer isomerizes to a dimeric intermediate, and the dimeric intermediate dissociates to a monomer, which then unfolds. In contrast, a small protein concentration dependence was observed by circular dichroism, but not by fluorescence emission, at pH 4.5 and pH 4.2. There was no protein-concentration dependence to the data collected at pH 4. Overall, the results are consistent with the redistribution of the population of native dimer (N(2)) to dimeric intermediate (I(2)) to monomeric intermediate (I), as the pH is lowered so that at pH 4, the "native" ensemble resembles the monomeric intermediate (I) observed during unfolding at higher pH. An emerging picture of the monomeric procaspase is discussed. Procaspase-3 is most stable at pH approximately 7 (24-26 kcal/mol), and while the stability decreased with pH, it was observed that dimerization contributes the majority (>70%) of the conformational free energy.

Indexed as

Caspase 3CaspasesDimerizationEnzyme ActivationEnzyme StabilityHydrogen-Ion ConcentrationProtein FoldingProtein Structure, TertiaryCaspase 3Caspases

Identifiers

PMID15576551
PMCPMC2253328

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.