Evidence map›Paper›PMID 15572680›Full record

ArticleMolecular and cellular biology2004

5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs.

Feng Fang, Jason Hoskins, J Scott Butler

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 92 citations in OpenAlex.

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  7. Intra-Frontiers in genetics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Feng FangDepartment of Microbiology and Immunology, Box 672, 601 Elmwood Avenue, Rochester, NY 14642, USA.
Jason Hoskins
J Scott Butler
Institute of Molecular Biology and Biophysics · RUUniversity of Rochester · US

Funding

ROCHESTER NATHAN SHOCK CENTERP30AG018254 · NIA · UNIVERSITY OF ROCHESTER · PI FEDEROFF, HOWARD J. · 2000 to 2004
$4.1M
The Yeast Exosome as a Model Anticancer Drug TargetR01CA095913 · NCI · UNIVERSITY OF ROCHESTER · PI BUTLER, JAMES SCOTT · 2002 to 2004
$836k
NCI NIH HHS CA 95913NCI NIH HHS R01 CA095913NIA NIH HHS P30 AG018254NIA NIH HHS P30 AG 18254
6 · The paper itself

Abstract

The antimetabolite 5-fluorouracil (5FU) is a widely used chemotherapeutic for the treatment of solid tumors. Although 5FU slows DNA synthesis by inhibiting the ability of thymidylate synthetase to produce dTMP, the drug also has significant effects on RNA metabolism. Recent genome-wide assays for 5FU-induced haploinsufficiency in Saccharomyces cerevisiae identified genes encoding components of the RNA processing exosome as potential targets of the drug. In this report, we used DNA microarrays to analyze the effect of 5FU on the yeast transcriptome and found that the drug causes the accumulation of polyadenylated fragments of the 27S rRNA precursor and that defects in the nuclear exoribonuclease Rrp6p enhance this effect. The size distribution of these RNAs and their sensitivity to Rrp6p suggest that they are normally degraded by the nuclear exosome and a 5'-3' exoribonuclease. Consistent with this hypothesis, 5FU inhibits the growth of RRP6 mutants with defects in the degradation function of the enzyme and it interferes with the degradation of an rRNA precursor. The detection of poly(A)(+) pre-RNAs in strains defective in various steps in ribosome biogenesis suggests that the production of poly(A)(+) pre-rRNAs may be a general result of defects in rRNA processing. These findings suggest that 5FU inhibits an exosome-dependent surveillance pathway that degrades polyadenylated precursor rRNAs.

Indexed as

AntimetabolitesExoribonucleasesExosome Multienzyme Ribonuclease ComplexFluorouracilFungal ProteinsGene DeletionGenes, FungalOligonucleotide Array Sequence AnalysisPoly APolyadenylationRibosomesRNA, FungalRNA, MessengerRNA PrecursorsRNA, RibosomalSaccharomyces cerevisiaeAntimetabolitesExoribonucleasesExosome Multienzyme Ribonuclease ComplexFluorouracilFungal ProteinsPoly ARNA, FungalRNA, MessengerRNA PrecursorsRNA, RibosomalRRP6 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID15572680
PMCPMC533989
OpenAlexW2146330762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.