Evidence map›Paper›PMID 15565467›Full record

ArticleHuman genetics2004

Mutations of RAI1, a PHD-containing protein, in nondeletion patients with Smith-Magenis syndrome.

Weimin Bi, G Mustafa Saifi, Christine J Shaw, Katherina Walz, Patricia Fonseca, Meredith Wilson, Lorraine Potocki, James R Lupski

Registry-linked trialAbstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00506259 (A Phase One Treatment Trial of the Circadian Sleep Disturbance in Smith-Magenis Syndrome), which is not on this map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00506259 phase1completednot on this mapstarted 2007, after this paper: background citation

A Phase One Treatment Trial of the Circadian Sleep Disturbance in Smith-Magenis Syndrome (SMS)

TypeinterventionalSponsorNational Human Genome Research Institute (NHGRI)Ran2007 to 2018Enrolled23ConditionsDevelopmental Delay Disorders, Chromosome Deletion, Mental Retardation, Sleep Disorders, Circadian RhythmArmsdTR Melatonin (NIH CC PDS), Phototherapy (Bright Light), Melatonin CR
3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 111 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. NovelJournal of personalized medicine · 2024
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  4. Complex Diagnostics of Non-Specific Intellectual Developmental Disorder.International journal of molecular sciences · 2022
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  8. Role of carotenoids and retinoids during heart development.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
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  14. A Rare De NovoBiology · 2018
    Article
  15. Article
  16. Article
  17. The application of clinical genetics · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Weimin BiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Room 604B, One Baylor Plaza, Houston, TX 77030-3498, USA.
G Mustafa Saifi
Christine J Shaw
Katherina Walz
Patricia Fonseca
Meredith Wilson
Lorraine Potocki
James R Lupski
Baylor College of Medicine · USChildren's Hospital at Westmead · AUTexas Children's Hospital · US

Funding

ZOLENDRONIC ACID IN CHILDREN W/ SEVERE OSTEOGENESIS IMPERFECTAM01RR000188 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI SHEARER, WILLIAM THOMAS · 1985 to 2011
$30.6M
UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
REPLICATING A PEER INTERVENTION IN A MULTI-CULTURAL CITYR01HD038420 · NICHD · UNIVERSITY OF WASHINGTON · PI MORRISON, DIANE M. · 1999 to 2003
$2.7M
MOLECULAR &CLINICAL ANALYSIS OF SMITH-MAGENIS SYNDROMEK08HD001149 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI POTOCKI, LORRAINE · 1996 to 2000
$85k
NCRR NIH HHS M01 RR00188NICHD NIH HHS HD 2406407NICHD NIH HHS K08 HD01149NICHD NIH HHS P01 HD38420
6 · The paper itself

Abstract

Smith-Magenis syndrome (SMS) is a mental retardation/multiple congenital anomalies disorder associated with a heterozygous approximately 4-Mb deletion in 17p11.2. Patients with SMS show variability in clinical phenotype despite a common deletion found in >75-80% of patients. Recently, point mutations in the retinoic acid induced 1 (RAI1) gene, which lies within the SMS critical interval, were identified in three patients with many SMS features in whom no deletion was detected. It is not clear if the entire SMS phenotype can be accounted for by RAI1 haploinsufficiency, nor has the precise function of RAI1 been delineated. We report two novel RAI1 mutations, one frameshift and one nonsense allele, in nondeletion SMS patients. Comparisons of the clinical features in these two patients, three of the previously reported RAI1 point mutation cases, and the patients with a common deletion suggest that the majority of the clinical features in SMS result from RAI1 mutation, although phenotypic variability exists even among the individuals with RAI1 point mutations. Bioinformatics analyses of RAI1 and comparative genomics between human and mouse orthologues revealed a zinc finger-like plant homeo domain (PHD) at the carboxyl terminus that is conserved in the trithorax group of chromatin-based transcription regulators. These findings suggest RAI1 is involved in transcriptional control through a multi-protein complex whose function may be altered in individuals with SMS.

Indexed as

Gene DeletionMutationAllelesAmino Acid SequenceAnimalsBlotting, NorthernChromatinCodon, NonsenseComputational BiologyConserved SequenceDatabases as TopicDNA, ComplementaryDNA Mutational AnalysisFrameshift MutationHeterozygoteHumansChromatinCodon, NonsenseDNA, ComplementaryProteinsRAI1 protein, humanTrans-ActivatorsTranscription Factors

Identifiers

PMID15565467
OpenAlexW2026303834

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.