Evidence map›Paper›PMID 15563627›Full record

ArticlePlant physiology2004

Effect of the Colorless non-ripening mutation on cell wall biochemistry and gene expression during tomato fruit development and ripening.

Emma M Eriksson, Arnaud Bovy, Ken Manning, Liz Harrison, John Andrews, Jacquie De Silva, Gregory A Tucker, Graham B Seymour

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 175 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genetic tapestry of Capsicum fruit colors: a comparative analysis of four cultivated species.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  7. Epigenetic insights into an epimutantFrontiers in plant science · 2024
    Review
  8. Article
  9. Cell Wall Integrity Signaling in Fruit Ripening.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Epigenetic regulation in tomato fruit ripening.Frontiers in plant science · 2023
    Review
  12. Identification of a novel locusFrontiers in genetics · 2023
    Article
  13. Review
  14. Proteomic Changes in Response toPlants (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. A tomato LATERAL ORGAN BOUNDARIES transcription factor,Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Emma M ErikssonWarwick HRI, Wellesbourne, Warwick CV35 9EF, United Kingdom.
Arnaud Bovy
Ken Manning
Liz Harrison
John Andrews
Jacquie De Silva
Gregory A Tucker
Graham B Seymour
Unilever (United Kingdom) · GBUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Colorless non-ripening (Cnr) mutation in tomato (Solanum lycopersicum) results in mature fruits with colorless pericarp tissue showing an excessive loss of cell adhesion (A.J. Thompson, M. Tor, C.S. Barry, J. Vrebalov, C. Orfila, M.C. Jarvis, J.J. Giovannoni, D. Grierson, G.B. Seymour [1999] Plant Physiol 120: 383-390). This pleiotropic mutation is an important tool for investigating the biochemical and molecular basis of cell separation during ripening. This study reports on the changes in enzyme activity associated with cell wall disassembly in Cnr and the effect of the mutation on the program of ripening-related gene expression. Real-time PCR and biochemical analysis demonstrated that the expression and activity of a range of cell wall-degrading enzymes was altered in Cnr during both development and ripening. These enzymes included polygalacturonase, pectinesterase (PE), galactanase, and xyloglucan endotransglycosylase. In the case of PE, the protein product of the ripening-related isoform PE2 was not detected in the mutant. In contrast with wild type, Cnr fruits were rich in basic chitinase and peroxidase activity. A microarray and differential screen were used to profile the pattern of gene expression in wild-type and Cnr fruits. They revealed a picture of the gene expression in the mutant that was largely consistent with the real-time PCR and biochemical experiments. Additionally, these experiments demonstrated that the Cnr mutation had a profound effect on many aspects of ripening-related gene expression. This included a severe reduction in the expression of ripening-related genes in mature fruits and indications of premature expression of some of these genes in immature fruits. The program of gene expression in Cnr resembles to some degree that found in dehiscence or abscission zones. We speculate that there is a link between events controlling cell separation in tomato, a fleshy fruit, and those involved in the formation of dehiscence zones in dry fruits.

Indexed as

Carboxylic Ester HydrolasesCell WallFruitGene Expression Regulation, PlantGlycoside HydrolasesGlycosyltransferasesMutationPeroxidasePhenotypePhylogenySolanum lycopersicumCarboxylic Ester HydrolasesGlycoside HydrolasesGlycosyltransferasespectinesterasePeroxidasexyloglucan endotransglycosylase

Identifiers

PMID15563627
PMCPMC535848
OpenAlexW2113005886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.