Evidence map›Paper›PMID 15550989›Full record

ArticlePLoS biology2004

Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells.

Peiman Hematti, Bum-Kee Hong, Cole Ferguson, Rima Adler, Hideki Hanawa, Stephanie Sellers, Ingeborg E Holt, Craig E Eckfeldt, Yugal Sharma, Manfred Schmidt and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 259 citations in OpenAlex.

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  14. Aberrant Clonal Hematopoiesis following Lentiviral Vector Transduction of HSPCs in a Rhesus Macaque.Molecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
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  20. Interactions between Retroviruses and the Host Cell Genome.Molecular therapy. Methods & clinical development · 2018
    Review

77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Peiman HemattiHematology Branch, National Institutes of Health Bethesda, Maryland, USA.
Bum-Kee Hong
Cole Ferguson
Rima Adler
Hideki Hanawa
Stephanie Sellers
Ingeborg E Holt
Craig E Eckfeldt
Yugal Sharma
Manfred Schmidt
Christof von Kalle
Derek A Persons
Eric M Billings
Catherine M Verfaillie
Arthur W Nienhuis
Tyra G Wolfsberg
Cynthia E Dunbar
Boris Calmels
National Institutes of Health · USSt. Jude Children's Research Hospital · USNational Heart Lung and Blood Institute · USNational Human Genome Research Institute · USUniversity of Minnesota · USCincinnati Children's Hospital Medical Center · USUniversity of Freiburg · DE

Funding

Mining the Sequence of the Human Genome for Important Sequence FeaturesZ01HG000185 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAXEVANIS, ANDREAS · 2001 to 2008
$406k
6 · The paper itself

Abstract

Murine leukemia virus (MLV)-derived vectors are widely used for hematopoietic stem cell (HSC) gene transfer, but lentiviral vectors such as the simian immunodeficiency virus (SIV) may allow higher efficiency transfer and better expression. Recent studies in cell lines have challenged the notion that retroviruses and retroviral vectors integrate randomly into their host genome. Medical applications using these vectors are aimed at HSCs, and thus large-scale comprehensive analysis of MLV and SIV integration in long-term repopulating HSCs is crucial to help develop improved integrating vectors. We studied integration sites in HSCs of rhesus monkeys that had been transplanted 6 mo to 6 y prior with MLV- or SIV-transduced CD34(+)cells. Unique MLV (491) and SIV (501) insertions were compared to a set of in silico-generated random integration sites. While MLV integrants were located predominantly around transcription start sites, SIV integrants strongly favored transcription units and gene-dense regions of the genome. These integration patterns suggest different mechanisms for integration as well as distinct safety implications for MLV versus SIV vectors.

Indexed as

Genetic VectorsGenomeAnimalsAntigens, CD34Binding SitesCell LineCloning, MolecularCluster AnalysisDNA PrimersGene Transfer TechniquesHematopoietic Stem CellsLeukemia Virus, MurineMacaca mulattaMolecular Sequence DataMutationPolymerase Chain ReactionAntigens, CD34DNA Primers

Identifiers

PMID15550989
PMCPMC529319
OpenAlexW2088223614

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.